Pairwise Alignments

Query, 274 a.a., tRNA pseudouridine(38-40) synthase TruA from Ralstonia solanacearum UW163

Subject, 297 a.a., tRNA pseudouridine synthase A (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  129 bits (324), Expect = 7e-35
 Identities = 96/294 (32%), Positives = 129/294 (43%), Gaps = 50/294 (17%)

Query: 1   MTRIALGIQYDGAAFSGWQSQPHGN-----TVQDVLEAALRQFGGVELPTTVAGRTDAGV 55
           M R+ L I Y G    GWQ Q H       TVQ VLE  + +  G ++    AGRTDAGV
Sbjct: 1   MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60

Query: 56  HALGQIVHLDTDLVREPFSWVRGTNAFLPSTVAVRWAQAVPEDFHARFSAHRRTYYYAL- 114
           HA GQ+ H+D    +    W +  NA LP  + +   +   +DFHARF A  + Y Y L 
Sbjct: 61  HADGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFHARFDALGKRYTYRLW 120

Query: 115 VSGPTRAPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTL 174
           ++     P L G+           LDV AM  AA+ L G HDF++F+       S V+T+
Sbjct: 121 LTRRFIPPKLHGQVWAT-----GPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTV 175

Query: 175 YSAE---------------------------------------VRGQGEWVFVRIRGSAF 195
           ++                                         + G G  +     G  F
Sbjct: 176 HAIRRCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGF 235

Query: 196 LHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMPDGLYLAEVGYP 249
           L  MVRN+MG LVA+GRG   A  +  ++A  DR  A  T    GL L+EV YP
Sbjct: 236 LKQMVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289