Pairwise Alignments

Query, 779 a.a., RNA-binding transcriptional accessory protein from Ralstonia solanacearum PSI07

Subject, 787 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  876 bits (2263), Expect = 0.0
 Identities = 465/794 (58%), Positives = 579/794 (72%), Gaps = 27/794 (3%)

Query: 6   LQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATGNLDDTHLRNLEERLLY 65
           +Q I   IA EL+V+ QQV A + LLD+GATVPF+ARYRKE TG LDDT LR L  RL Y
Sbjct: 1   MQNIAKIIAQELNVREQQVTATITLLDDGATVPFVARYRKEVTGGLDDTQLRTLYSRLGY 60

Query: 66  LRELEDRRAAILASIEEQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQIARECG 125
           LREL DRR  IL+SI+ QGKLT  L+AAI+ A++K  LEDLYLPYKPKRRT+ QIA E G
Sbjct: 61  LRELNDRRQVILSSIQAQGKLTAELQAAIDQADSKTRLEDLYLPYKPKRRTKGQIAIEAG 120

Query: 126 LEPLAQALLADPTLDPQAEAAKFVNGKPTAEGGVPDAKAALDGARDILSEQFGETAALLG 185
           +EPL   LL+D   D +A A++++N    AE G+ + KA LDGAR IL E+F E A LL 
Sbjct: 121 IEPLVDRLLSDRQADIEALASEYLN----AEAGLDEVKAVLDGARFILMERFAEDAELLQ 176

Query: 186 KLRDHLWSQGVVASTVVEGKETAEEEKFRDYYAYSEPIRNVPSHRALALFRGRNAGVLFV 245
           K+R HL    V+ S VV+GKE  E  KFRDY+ +SE + NVPSHRALA+ RGRN GVL +
Sbjct: 177 KVRQHLTQIAVLESHVVKGKEK-EGAKFRDYFEHSEKLMNVPSHRALAMLRGRNEGVLSL 235

Query: 246 KLGLGEEQDAMIPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHLETELLTQ 305
            +    + +A     CE +IA H  ++    A D+WL  V    WR+K+   +ETE + +
Sbjct: 236 SMNADPDSEAKSGSYCEVIIADHFNLKLSDSAVDQWLKLVVTSTWRIKIALQMETEFIAK 295

Query: 306 LRESAEAEAIKIFGRNLHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLETATIY 365
           LRE AE EAI +F RNL DLL+AAPAG KA +G+DPG+RTG KVA+V++TGKL+   TI+
Sbjct: 296 LRERAETEAINVFARNLGDLLMAAPAGAKATLGLDPGLRTGVKVAIVNNTGKLMAHTTIF 355

Query: 366 PHEPRRDWNGSLATLARLAKQHGVSLVSIGNGTASRETDKLVQDLMHNLAKSAPEQKLTK 425
           PH P+  W+ S+ TLA L K H V L++IGNGTASRETDKL  +L+  L    P   LTK
Sbjct: 356 PHAPQNQWDKSIRTLANLVKMHKVELIAIGNGTASRETDKLAGELIAELKSELPT--LTK 413

Query: 426 IVVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQH 485
           I+VSEAGASVYSASELAA+EFPELDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQH
Sbjct: 414 IMVSEAGASVYSASELAAEEFPELDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQH 473

Query: 486 DVNQRELARALDAVVEDCVNAVGVDVNTASSALLARVSGLNSILAKNIVEYRDANGAFAN 545
           DV+Q +L+++L+AVVEDCVN VGVD+N AS  LL +V+GLN  LA+NIVEYRD NG F +
Sbjct: 474 DVSQSQLSQSLEAVVEDCVNGVGVDLNMASMPLLTQVAGLNKTLARNIVEYRDQNGQFTS 533

Query: 546 REALKQVPRLGDKTFEQAAGFLRINNGDNPLDRSSVHPEAYPVVQRILECIKKGIGDVLG 605
           R+ L +VPRLG K FEQAAGFLRI  GDNPLD S+VHPE Y +V+ I +  ++ +  ++G
Sbjct: 534 RKQLLKVPRLGPKAFEQAAGFLRIREGDNPLDASAVHPETYALVESIAKAQQQAVDALIG 593

Query: 606 NREALRGVTAQAFTDDKFGLPTVVDILGELEKPGRDPRPEFKTATFQDGVEDIKDLQPGM 665
           N + L+ + A+AF  ++FGLPT+ DIL EL+KPGRDPR EFKTA F++GVE+IKDL+  M
Sbjct: 594 NTDLLKQIDAKAFVTEEFGLPTIEDILSELDKPGRDPRGEFKTAVFKEGVEEIKDLKVEM 653

Query: 666 VLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQVVKVKVMEVDVKR 725
           +LEGVVTNV  FGAF+DIGVHQDGLVH+S+L+ KFV DPH VVK G VVKVKVMEVD +R
Sbjct: 654 ILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDAER 713

Query: 726 NRIGLTMRLADEPGQV---------PARSG------GDRPAGGNRNGGQQRRAPEPA--- 767
            RI LTMRL ++PG+           A++G      G  P G ++  GQ ++   PA   
Sbjct: 714 KRISLTMRLDEKPGEKQMSHQGGKGQAKAGQGKGHQGKSPQGKSQAKGQYKQPKAPANAA 773

Query: 768 --GAMAAAFAKLKR 779
              A A AFAKLK+
Sbjct: 774 MGNAFADAFAKLKK 787