Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  132 bits (332), Expect = 2e-34
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 28/326 (8%)

Query: 573  DPM-GRVEYFSSIMRDITQDKAAKEALQRSRETLQTVTDAMPALVAFVDADERFRFLNAA 631
            DP+ GRV+  + I  DIT  +  ++ ++   +     ++     V  +DADER R  N A
Sbjct: 906  DPVSGRVKKVAGIYTDITTQRMLEDDVKLLAQAFANTSEG----VLILDADERVRVSNKA 961

Query: 632  YEKVFDRPTAAMLGLTVHEVLGEEAYAAMRGPLQRALAGETVVFEREA---PDRDPYRCD 688
             + +        LG++  +++  + Y A         + E  +   +         ++C 
Sbjct: 962  AQSI--------LGMSADDLI--DRYFAQLVHSSEDRSDEINILLEQGITWTGEHEFQCA 1011

Query: 689  EITYIPQF-------DARGRVAGVHAVMLDITERKKQELHLRALSTTDHLTGLLNRAGFE 741
            E    P +       D RG ++   AV  DITERK+ E  LR L+  D LTGL NR+ F 
Sbjct: 1012 EGLICPVWLNLSTMKDDRGNISHYVAVFSDITERKQTEADLRRLANYDVLTGLPNRSLFA 1071

Query: 742  ARLSAALAQARGDGTVGALLLLDLDGFKVVNDTHGHAVGDALLRRFAQRLARTVRPCDGV 801
            ARL+  + +A       AL+ LDLD FK VND++GH++GDALL   A RL   V     +
Sbjct: 1072 ARLAKCIHRAEQTEDKLALIFLDLDRFKNVNDSYGHSMGDALLVEAASRLQSCVSENHTL 1131

Query: 802  ARFGGDEFAVI---LAQPDDARAVARHILAACDRPFRLGEAVVRVGASIGIAGFDAGTLA 858
             RFGGDEF ++   +   D+   +   ++   ++PF L      +  SIG++ +      
Sbjct: 1132 CRFGGDEFVILMRDMVDIDEVNHLCEALIRQIEKPFELYGREFFISTSIGVSLWPDDAKQ 1191

Query: 859  QSAVFEAADEALYEAKSRGKGLFVAF 884
               + + AD+A+Y AK  G+G F  F
Sbjct: 1192 PEVLIKNADQAMYHAKEEGRGNFQYF 1217



 Score = 43.9 bits (102), Expect = 7e-08
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 451  VEGQVVGHVGAMEDITVRARAEQASRVLTQILDSTTDFVAQTDVQGRVTYINPAGRRFAG 510
            V G+V    G   DIT +   E   ++L Q   +T++ V   D   RV   N A +   G
Sbjct: 908  VSGRVKKVAGIYTDITTQRMLEDDVKLLAQAFANTSEGVLILDADERVRVSNKAAQSILG 967

Query: 511  VALDADVRDRR-AETFYPDDTMQWLREVAVPTAARDGV-WIGETTVFDAQRRAVPINHMV 568
            ++ D D+ DR  A+  +  +     R   +      G+ W GE     A+    P+   +
Sbjct: 968  MSAD-DLIDRYFAQLVHSSED----RSDEINILLEQGITWTGEHEFQCAEGLICPVWLNL 1022

Query: 569  IVHRDPMGRVEYFSSIMRDITQDKAAKEALQR 600
               +D  G + ++ ++  DIT+ K  +  L+R
Sbjct: 1023 STMKDDRGNISHYVAVFSDITERKQTEADLRR 1054