Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  137 bits (345), Expect = 3e-36
 Identities = 138/534 (25%), Positives = 226/534 (42%), Gaps = 41/534 (7%)

Query: 376 HMVYANQACRRLLGLTLEEAMTGTWLARLHPQDREAVTAGWADAVTRGVGHCAELRVIVP 435
           H +  N    ++L  +  E +  TW    + +D +A    +   + +G     E+     
Sbjct: 225 HWIKVNPRLCKMLKYSETELLNRTWTELTYFEDLKADMTQF-QRMLKGEIDAYEMDKRFV 283

Query: 436 GRDERLLVVN--TAPVRVEGQVVGHVGAMEDITVRARAEQASRV----LTQILDSTTDFV 489
            +D  ++  +   A  R    V   +  + DIT   RA+ A R     L  +L+S+   +
Sbjct: 284 AKDGEIVYTHLTVACRRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGM 343

Query: 490 AQTDVQGRVTYINPAGRRFAGVALDADVRDRRA--ETFYPDDTMQWLREVAVPTAARDGV 547
              D++   T  NP   +  G  L+   RD R   +  +P D M  L  +       D  
Sbjct: 344 WDWDIKSNETKRNPWCAKVLGCDLERLNRDSRIWIDAIHPQDRMAVLNSI-------DRH 396

Query: 548 WIGETTVFDAQRRAVPIN---HMV-----IVHRDPMGRVEYFSSIMRDITQDKAAKEALQ 599
             GET     + R + ++   H +     +V RD  G       +  DIT+ K  +E+L+
Sbjct: 397 LKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQESLE 456

Query: 600 RSRETLQTVTDAMPALVAFVDADERFRFLNAAYEKVFDRPTAAMLGLTVHEVLGEEAYAA 659
            +       ++AM    +  D       +NAA+  +        L   +  +       +
Sbjct: 457 LAASVYNNSSEAM----SVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRS 512

Query: 660 MRGPLQRALA------GETVVFEREAPDRDPYRCDEITYIPQFDARGRVAGVHAVMLDIT 713
               +  A+       GE  +  +   +   +    +T    FD  G+V    A+  DIT
Sbjct: 513 QYDEMNSAIRDTGYWQGELWIKNKSGEEYMVW----LTINTIFDQHGQVYRRVALFSDIT 568

Query: 714 ERKKQELHLRALSTTDHLTGLLNRAGFEARLSAALAQARGDGTVGALLLLDLDGFKVVND 773
           E+K+ E  +   +  D LTGL NR      L+  + +   + +  AL+ LDLD FK VND
Sbjct: 569 EKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVND 628

Query: 774 THGHAVGDALLRRFAQRLARTVRPCDGVARFGGDEFAVILA---QPDDARAVARHILAAC 830
           T GH +GD LL+  A+RL   +R  D VAR GGDEF V+L+    P     VA+ IL   
Sbjct: 629 TLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERI 688

Query: 831 DRPFRLGEAVVRVGASIGIAGFDAGTLAQSAVFEAADEALYEAKSRGKGLFVAF 884
             P+ LG+    + ASIGI  +     +   + + AD+A+Y AK +G+  F  F
Sbjct: 689 AEPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYF 742



 Score = 51.2 bits (121), Expect = 3e-10
 Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 40/264 (15%)

Query: 357 LEAVNDASPLGLFRCDAAGHMVYANQACRRLLGLTLEEAMTGT--WLARLHPQDREAVTA 414
           L  V ++S LG++  D   +    N  C ++LG  LE     +  W+  +HPQDR AV  
Sbjct: 332 LALVLESSDLGMWDWDIKSNETKRNPWCAKVLGCDLERLNRDSRIWIDAIHPQDRMAVLN 391

Query: 415 GWADAVTRG--VGHCAELRVIVPGRDERLLVVNTAPVRVE--GQVVGHVGAMEDITVRAR 470
              D   +G    H  E R+I    +E  ++     V  +  G      G   DIT + +
Sbjct: 392 S-IDRHLKGETQKHYIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKK 450

Query: 471 AEQASRVLTQILDSTTDFVAQTDVQGRVTYINPAGRRFAGV----ALDADVR----DRRA 522
            +++  +   + +++++ ++  D +G +  IN A     G     AL  ++R     R  
Sbjct: 451 VQESLELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTP 510

Query: 523 ETFYPD------DTMQWLREVAVPTAARDG--VWIGETTVFDAQRRAVPINHMVIVHRDP 574
            + Y +      DT  W  E+ +   + +   VW+   T+FD              H   
Sbjct: 511 RSQYDEMNSAIRDTGYWQGELWIKNKSGEEYMVWLTINTIFDQ-------------HGQV 557

Query: 575 MGRVEYFSSIMRDITQDKAAKEAL 598
             RV  FS    DIT+ K A+  +
Sbjct: 558 YRRVALFS----DITEKKEAEHII 577