Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (340), Expect = 1e-35
 Identities = 145/538 (26%), Positives = 225/538 (41%), Gaps = 53/538 (9%)

Query: 378 VYANQACRRLLGLTLEEAMTGTWLARLHPQDREAVTAGWADAVTRGVGHCA-ELRVIVPG 436
           +  N    ++L  + +E +  TW    HP D +A  A +   +   + +   + R I   
Sbjct: 218 IKVNPRLCQMLKYSEDELLHMTWKQLTHPDDLDADVAKFEQMLAGNIDNYELDKRFIAKN 277

Query: 437 RDERLLVVNTAPVRVEGQVVGHVGAMEDITVRARAEQ---ASRVLTQILDSTTDF----- 488
                  +  A  R   QV+  +    D+T +  A++   ASR   +++ S++D      
Sbjct: 278 GSLVYTHMTVACKRTNHQVLLVISGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDW 337

Query: 489 ----------VAQTDVQG-RVTYINPAGRRFAG--VALDADVRDRRAETFYPDDTMQWLR 535
                         D+ G  +  +N   R++    VA D     +  E     +T Q   
Sbjct: 338 DIRNDHIERNTRSADILGCDIDMLNANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHKM 397

Query: 536 EVAVPTAARDGVWIGETTVFDAQRRAVPINHMVIVHRDPMGRVEYFSSIMRDITQDKAAK 595
           E  + T  RD  WI +T                +V RD             DIT+ K  +
Sbjct: 398 EYRLKTLNRDIRWILDTGK--------------VVSRDANNNALRMCGTYTDITEAKLIE 443

Query: 596 EALQRSRETLQTVTDAMPALVAFVDADERFRFLNAAYEKVFDRPTAAMLGLTVH----EV 651
           E+L+ S       ++AM  L    D +     +NAA+  +     + + G  +     ++
Sbjct: 444 ESLKLSALVYDNSSEAMSVL----DENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDL 499

Query: 652 LGEEAYAAMRGPLQRALAGETVVFEREAPDRDPYRCDEITYIPQFDA--RGRVAGVHAVM 709
            G E Y  M   ++     +  + +R   + +      I  I   D     RVA    + 
Sbjct: 500 NGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVA----LF 555

Query: 710 LDITERKKQELHLRALSTTDHLTGLLNRAGFEARLSAALAQARGDGTVGALLLLDLDGFK 769
            DIT++K+ E  +   +  D LTGL NR      LSA +  A  +    AL+ LDLD FK
Sbjct: 556 SDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFK 615

Query: 770 VVNDTHGHAVGDALLRRFAQRLARTVRPCDGVARFGGDEFAVILAQPDDARA---VARHI 826
            VNDT GHA+GD LL   A RL   VR  D VAR GGDEF V+L+   D +    VA HI
Sbjct: 616 EVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHI 675

Query: 827 LAACDRPFRLGEAVVRVGASIGIAGFDAGTLAQSAVFEAADEALYEAKSRGKGLFVAF 884
           L     P+ LGE    + ASIGI  +   + +   + + AD+A+Y AK +G+  F  F
Sbjct: 676 LRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYF 733



 Score = 43.1 bits (100), Expect = 8e-08
 Identities = 59/268 (22%), Positives = 103/268 (38%), Gaps = 11/268 (4%)

Query: 349 EVTRQRAELEAVNDASPLGLFRCDAAGHMVYANQACRRLLGLTLE--EAMTGTWLARLHP 406
           EV   R +LE V  +S LG++  D     +  N     +LG  ++   A +  W+  +  
Sbjct: 315 EVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDSIVA 374

Query: 407 QDREAVTAGWADAVTRG--VGHCAELRVIVPGRDERLLVVNTAPV---RVEGQVVGHVGA 461
           +DR  V     +A  RG    H  E R+    RD R  +++T  V         +   G 
Sbjct: 375 EDRPQVLQS-IEAHIRGETPQHKMEYRLKTLNRDIR-WILDTGKVVSRDANNNALRMCGT 432

Query: 462 MEDITVRARAEQASRVLTQILDSTTDFVAQTDVQGRVTYINPAGRRFAGVALDADVRDRR 521
             DIT     E++ ++   + D++++ ++  D  G +  +N A     G + ++++R + 
Sbjct: 433 YTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYS-ESEIRGQH 491

Query: 522 AETFYPDDTMQWLREVAVPTAARDGVWIGETTVFDAQRRAVPINHMVIVHRDPMGRVEYF 581
               Y D       +         G W GE            I   +   +D  G     
Sbjct: 492 IRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRR 551

Query: 582 SSIMRDITQDKAAKEALQRSRETLQTVT 609
            ++  DIT DK   E L   +    T+T
Sbjct: 552 VALFSDIT-DKKQSEHLIWKQANYDTLT 578