Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 2e-33
 Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 13/310 (4%)

Query: 578  VEYFSSIMRDITQDKAAKEALQRSRETLQTVTDAMPALVAFVDADERFRFLNAAYEKVFD 637
            +E  + I  DIT  +  ++ +    +  +  ++     V  +D DE  R  N A + +  
Sbjct: 913  IERVAGIYSDITLRRQLEDEVSLLAQAFENTSEG----VLILDVDENIRVANHAAQHIIG 968

Query: 638  RPTAAMLGLTVHEVLGEEAYAAMRGPLQRALAGETV-VFEREAPDRDPYRCDEITYIPQF 696
                +++GL+  + +  +    +   + + L  ET    ERE   ++   C     +   
Sbjct: 969  SEQKSLVGLSFSQFV--QMKDGLSTEVAQLLGQETSWTGERELVGQNGLVCPVWLNVSVM 1026

Query: 697  DARGRVAGVHAVML--DITERKKQELHLRALSTTDHLTGLLNRAGFEARLSAALAQARGD 754
             +  + A +H V++  DITERK+ E  LR L+  D LTGL NR+ F  RL  ++  A  +
Sbjct: 1027 QSVNQNA-IHYVVVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQN 1085

Query: 755  GTVGALLLLDLDGFKVVNDTHGHAVGDALLRRFAQRLARTVRPCDGVARFGGDEFAVIL- 813
            G   ALL LDLD FK VND++GH++GDALL   + RL   +     + RFGGDEF ++L 
Sbjct: 1086 GEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLK 1145

Query: 814  --AQPDDARAVARHILAACDRPFRLGEAVVRVGASIGIAGFDAGTLAQSAVFEAADEALY 871
               +  D   +A  +LA    PFRL      +  SIGI+ +    +   A  + AD A+Y
Sbjct: 1146 NVKELSDINHLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMY 1205

Query: 872  EAKSRGKGLF 881
             AK  G+G F
Sbjct: 1206 HAKEEGRGNF 1215