Pairwise Alignments

Query, 895 a.a., PAS domain S-box protein from Ralstonia solanacearum PSI07

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (355), Expect = 3e-37
 Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 17/322 (5%)

Query: 569  IVHRDPMGRVEYFSSIMRDITQDKAAKEALQRSRETLQTVTDAMPALVAFVDADERFRFL 628
            +V  +   R    +   R+IT  K  +  L  S + L ++ +A    V     D R R +
Sbjct: 927  VVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEA----VVVAGLDYRIRSV 982

Query: 629  NAAYEKVFDRPTAAMLGLTVHEVLGEEAYAAMRGPLQRALAGETVVFEREAPD---RDPY 685
            N A+  +    T    G    + L   AY+  +  L  ++  + +  +  A +   R+  
Sbjct: 983  NPAFSAI----TGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKA 1038

Query: 686  RCDEITYIP---QFDARGRVAGVHAVMLDITERKKQELHLRALSTTDHLTGLLNRAGFEA 742
            R   + ++      D +G  +   AV  DITERKK E  LR L++ D LTGL NR  F+ 
Sbjct: 1039 RRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQD 1098

Query: 743  RLSAALAQARGDGTVGALLLLDLDGFKVVNDTHGHAVGDALLRRFAQRLARTVRPCDGVA 802
            RL+ A++QA     + ALL LDLD FK +ND+ GH +GD LL+  A RL   VR  D VA
Sbjct: 1099 RLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVA 1158

Query: 803  RFGGDEFAVIL---AQPDDARAVARHILAACDRPFRLGEAVVRVGASIGIAGFDAGTLAQ 859
            R GGDEF +IL   A+   A  ++  +L A   PF L +  + +  SIGI+ +       
Sbjct: 1159 RLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDV 1218

Query: 860  SAVFEAADEALYEAKSRGKGLF 881
             ++ + AD A+Y AK+ G+  F
Sbjct: 1219 DSLIKFADTAMYHAKALGRNNF 1240



 Score = 40.8 bits (94), Expect = 6e-07
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 6/182 (3%)

Query: 439  ERLLVVNTAPVRVEGQVVGHVGAMEDITVRARAEQASRVLTQILDSTTDFVAQTDVQGRV 498
            ER  VV T     + + +   G   +IT R   E    + +Q+L+S  + V    +  R+
Sbjct: 923  ERGKVVET---NAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRI 979

Query: 499  TYINPAGRRFAGVALDADVRDRRAETFYPDDTMQWLREVAVPTAARDGVWIGETTVFDAQ 558
              +NPA     G + +  + D+           + L         R   W GE  + +  
Sbjct: 980  RSVNPAFSAITGYS-EGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKA 1038

Query: 559  RRAVPINHMVIVHRDPMGRVEYFSSIMRDITQDKAAKEALQRSRETLQTVTDAMPALVAF 618
            RRA+ +   +    D  G   +F ++  DIT+ K A+E L R   +  T+T  +P    F
Sbjct: 1039 RRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDL-RFLASFDTLT-GLPNRTLF 1096

Query: 619  VD 620
             D
Sbjct: 1097 QD 1098