Pairwise Alignments

Query, 311 a.a., branched-chain amino acid ABC transporter permease from Ralstonia solanacearum GMI1000

Subject, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  271 bits (694), Expect = 1e-77
 Identities = 150/305 (49%), Positives = 210/305 (68%), Gaps = 13/305 (4%)

Query: 1   MDIFIQQIVNGLVLGSIYALIALGYTMVYGILGIINFAHGDVLMIGAMSALTAINFLQKF 60
           M+ FIQQ++NGL LGSIY LIA+GYTMVYGI+G+INFAHGD+ M+G  +AL        F
Sbjct: 1   MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSF 60

Query: 61  FPNLPDWLTLVLALLFAMPVCAVVAYTIERVAYRPLRNAPRLAPLITAIGVSIVLQTLAM 120
           F  +P  L L+L ++ AM +  +  + IERVAYRPLR + RLAPLITAIG+SI L     
Sbjct: 61  FAGIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQ 120

Query: 121 MIWSRNPLTFPQLLPSSPIDIGSTGA-TITGKEIAIILVSLAVMTGLTLLVNRTKLGRAM 179
           +  ++ P   P  +PS   +    GA T++ K++ I++V+  ++     +VN+T LGRA 
Sbjct: 121 V--TQGPRNKP--IPSMVTESYHFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176

Query: 180 RATAENQRVAGLMGVNPNFVISATFMIGAAMAAVAGVMMATNYGNAHFYMGFIPGLKAFT 239
           RAT +++++A L+GV+ +  IS TF++GAA+AAVAG M    YG A F  GF+PG+KAFT
Sbjct: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236

Query: 240 AAVLGGIGNLAGAMVGGVLLGLIEALGAGYIGDLTGGVFGSNYQDVFAFIVLICVLLFRP 299
           AAVLGGIG+L GA++GG+L+GLIE+L + Y        F   Y+DV AF +L  VL+F+P
Sbjct: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAY--------FSIAYKDVAAFGILAFVLIFKP 288

Query: 300 SGIMG 304
           +GI+G
Sbjct: 289 TGILG 293