Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 678 a.a., excinuclease ABC, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  702 bits (1813), Expect = 0.0
 Identities = 370/665 (55%), Positives = 487/665 (73%), Gaps = 15/665 (2%)

Query: 4   EFKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPTMVL 63
           +FK+ S++ P+GDQP AI+ L EG+ +G   Q LLGVTGSGKTFTVANVI ++ RPT+VL
Sbjct: 2   DFKIISDYSPTGDQPNAIKNLSEGISSGEPSQVLLGVTGSGKTFTVANVIQEVQRPTLVL 61

Query: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123
             NKTLAAQLYGE K+FFP+NAVEYF+SYYDYYQPEA++P+S  +IEKD S+NE IE++R
Sbjct: 62  CHNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFIPTSGVYIEKDLSINEEIEKLR 121

Query: 124 LSATKALLE-RRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQYA 182
           LSAT ALL  RRDVIVVASVS IYG+G+P+ + K +++L +G  I +  +L +L ++ Y+
Sbjct: 122 LSATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNVVNLEEGQRIPRNQLLFQLVDILYS 181

Query: 183 RNDQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPRFT 242
           R +  F+  TFRV+G+ +D+F A +D  A RI  +  E+E +   DP TG+      + T
Sbjct: 182 RANVEFKHGTFRVKGDTVDIFVAYAD-FAYRIYFWGDEIEGIQRIDPETGKRISSEKQIT 240

Query: 243 IYPKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNELGY 302
           I+P   +VT +E I  A++EI+ +L  +      + +L E  R+ +RT+FDLEM+ ELGY
Sbjct: 241 IFPANLFVTGKETIDVAIKEIQDDLMSQISFFEKDMRLEEASRLRERTEFDLEMIRELGY 300

Query: 303 CSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKETLV 362
           CSG+ENYSRY   R  G  P  L DY P D +L++DESHVT+PQI  M+ GDRSRK  LV
Sbjct: 301 CSGVENYSRYFDRRSAGARPFCLLDYFPDDYMLVIDESHVTVPQIRAMWGGDRSRKVNLV 360

Query: 363 EYGFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLDPI 422
           EYGFRLPSALDNRP++F+EFE+L  Q IYVSATP  YEL ++   VV+Q++RPTGLLDP+
Sbjct: 361 EYGFRLPSALDNRPLKFDEFESLTNQVIYVSATPADYELNQTDGVVVEQIIRPTGLLDPL 420

Query: 423 IEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDIDT 482
           IEVRP   Q+DDLL EI + +   +RVLVTTLTKRMAE+L ++LE  G K RY+HS++ +
Sbjct: 421 IEVRPSGDQIDDLLEEIDQTIKKGDRVLVTTLTKRMAEELNKFLERAGIKSRYIHSEVKS 480

Query: 483 VERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542
           ++RVEI+R+LRLG FDVLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ERSL+QTIGRA
Sbjct: 481 LDRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRA 540

Query: 543 ARNLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLGQP 602
           ARN NG+ I+Y D++T SM RAI+ET+RRR+ Q AYN E+GITP  + K    I  +GQ 
Sbjct: 541 ARNENGRVIMYADRVTASMQRAIDETKRRRSIQMAYNEEHGITPKTVIKSKDKI--MGQT 598

Query: 603 K---TKKNK-------DKRDAEAAQ-TFKSLTPKALEQRIKELESKMYAHAQNLEFEEAA 651
           K   +KKN         + +A AA    + L+ + LE+ I + + +M   A+ L F EAA
Sbjct: 599 KVADSKKNAKFYDDHFTEENAYAADPVVQYLSKEKLEKLIPQTQKQMEKAAKELNFMEAA 658

Query: 652 NTRDE 656
             RDE
Sbjct: 659 RLRDE 663