Pairwise Alignments

Query, 668 a.a., excinuclease ABC subunit B from Rahnella sp. WP5

Subject, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

 Score = 1145 bits (2963), Expect = 0.0
 Identities = 586/673 (87%), Positives = 622/673 (92%), Gaps = 5/673 (0%)

Query: 1   MSKEFKLHSEFKPSGDQPEAIRRLEEGLENGLAHQTLLGVTGSGKTFTVANVIADLNRPT 60
           MSK FKL+S FKPSGDQPEAIRRLEEGLE+GLAHQTLLGVTGSGKTFT+ANVIADL RPT
Sbjct: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120
           MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQ 180
           QMRLSATKA+LERRDV+VVASVSAIYGLGDPDLYLKMMLHLT GMIIDQR+ILRRLAELQ
Sbjct: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180

Query: 181 YARNDQAFQRSTFRVRGEVIDVFPAESDDLALRIELFDQEVERLSLFDPLTGQVQHEVPR 240
           YARNDQAFQR TFRVRGEVID+FPAESDD+ALR+ELFD+EVERLSLFDPLTGQ+   +PR
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240

Query: 241 FTIYPKTHYVTPRERIVQAMEEIKVELADRRKVLLANNKLLEEQRISQRTQFDLEMMNEL 300
           FTIYPKTHYVTPRERIVQAMEEIK ELA RRKVLL NNKLLEEQR++QRTQFDLEMMNEL
Sbjct: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300

Query: 301 GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLIVDESHVTIPQIGGMYKGDRSRKET 360
           GYCSGIENYSR+LSGRGPGEPPPTLFDYLPADGLL+VDESHVTIPQIGGMY+GDR+RKET
Sbjct: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360

Query: 361 LVEYGFRLPSALDNRPMRFEEFEALAPQSIYVSATPGKYELEKSGDDVVDQVVRPTGLLD 420
           LVEYGFRLPSALDNRP++FEEFEALAPQ+IYVSATPG YELEKSG DVVDQVVRPTGLLD
Sbjct: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420

Query: 421 PIIEVRPVTTQVDDLLSEIRKRVAINERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI 480
           PIIEVRPV TQVDDLLSEIR+R AINERVLVTTLTKRMAEDLTEYLEEHGE+VRYLHSDI
Sbjct: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480

Query: 481 DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540
           DTVER+EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
Sbjct: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540

Query: 541 RAARNLNGKAILYGDKITNSMARAIEETERRRAKQEAYNLENGITPMGLNKKISDILQLG 600
           RAARN+NGKAILYGDKIT SMA+AI ETERRR KQ+ YN E+GITP GLNKK+ DIL LG
Sbjct: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600

Query: 601 Q--PKTK---KNKDKRDAEAAQTFKSLTPKALEQRIKELESKMYAHAQNLEFEEAANTRD 655
           Q   KTK   + K +   E       ++PKAL+Q+I ELE  M  HAQNLEFEEAA  RD
Sbjct: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660

Query: 656 ELHALREQFIAIS 668
           +LH LRE FIA S
Sbjct: 661 QLHQLRELFIAAS 673