Pairwise Alignments

Query, 259 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 260 a.a., histidine/lysine/arginine/ornithine transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  236 bits (602), Expect = 4e-67
 Identities = 118/258 (45%), Positives = 173/258 (67%), Gaps = 3/258 (1%)

Query: 1   MKKLKIALLLGCAVASFSAL--ADGSTLKFGLEAQYPPFESKSATGELQGFDIDLGNAVC 58
           MKKL ++L L  A +S +A   A    ++ G +  Y PFESK++ GEL GFDIDL   +C
Sbjct: 1   MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELC 60

Query: 59  AAASVKCDWYDTSFDGLIAALQARKFDAINSAMNVTDKRRQAIDFTNVIYRVPTKLIAKK 118
              + +C + +   D LI +L+A+K DAI S++++T+KR+Q I FT+ +Y   ++L+  K
Sbjct: 61  KRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAK 120

Query: 119 DSGLLPTTESLKGKHIGVLQGSIQESYAQAHWAPKGVDIVSYQDQNQVYLDLSSGRLDGT 178
           +S + PT ESLKGK +GVLQG+ QE++   HWAPKG++IVSYQ Q+ +Y DL++GR+D  
Sbjct: 121 NSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAA 180

Query: 179 LVLAPAGQTGFLSRPDGKDYGFVGDAVRDDKILGSGIAFGLRKGDTQLKEKLDTAIAKVQ 238
                A   GFL +P GKDY F G +V+D+K+ G G   GLRK D +L+E L+ A A+++
Sbjct: 181 FQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMR 240

Query: 239 KDGVVKELSKKYFGDIDV 256
            DG  ++L+KKYF D DV
Sbjct: 241 ADGTYEKLAKKYF-DFDV 257