Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Rahnella sp. WP5

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  262 bits (670), Expect = 3e-74
 Identities = 181/586 (30%), Positives = 301/586 (51%), Gaps = 32/586 (5%)

Query: 18  YLGAVALLVI-IAVLQLLPPKLVGVI---IDGVTSKQMSYGVLFAWLGLM-----LGTAV 68
           Y+G   L ++   +     P L G++   +DG+++ +    VLF  +  +     L    
Sbjct: 27  YVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPE---AVLFPNVPYLRDLQLLQAVP 83

Query: 69  VVYLLRYVWRVL--------LFGASYQLAVELRQDFFRQLSRQHPAFYLRHRTGDLIARA 120
           ++ +L   W+ L        L   S  L  +LR   F +L      ++  H +G LI+R 
Sbjct: 84  LLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGHLISRI 143

Query: 121 TNDVDRVVFAAGEGVLTLVDSLVMGLAVLIVMATQI--SWELTLLSLVPMPVMAIIIKRY 178
           T +V  V  AA + +  ++     GL V+ + A  +  +W LTL+ +  +PV+A+++   
Sbjct: 144 TFNVTMVTGAATDAIKVVIRE---GLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVSIA 200

Query: 179 GDQLHSRFKTAQAAFSSLNDQAQESLTSIRMIKAFGLENHQSSQFADVAADTGAKNMRVA 238
             +   + K  Q A   +   A E++   R++++FG E ++  +F   +     K +R+ 
Sbjct: 201 SKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSNTDKQLRMT 260

Query: 239 RVDARFDPTIYVSI--GMANLLAIGGGSWMVVNGHLTLGELTSFVMYLGLMIWPMLALAW 296
           +  + + P + + I   MA L+ +     + + G  T G+L +++   GL+  P+  L+ 
Sbjct: 261 KTGSLYTPMLQLVIYSAMAALMFLV----LFLRGDSTAGDLVAYITAAGLLPKPIRQLSE 316

Query: 297 MFNIVERGSAAYSRIRSLLQEAPAVVDGTTPLPAGRATLEAHINDFHYPENSHAALTTVT 356
           + + +++G A    I   L EAP V  GT         LE     F YP      L+ ++
Sbjct: 317 VSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEVRNLSFTYPGTEREVLSDIS 376

Query: 357 FSLQPGQMLGLCGPTGSGKSTLLSLLQRQFDVTDGDVCYHGLSLKEIQLDDWRARLAVVS 416
           F  +PGQM+ L G +GSGKSTL +L+ R +    G +   G+ ++  +L + R  ++ V+
Sbjct: 377 FVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVSQVT 436

Query: 417 QTPFLFSDTVAQNIALGR-PDATQEEIEEAARLASVHDDILRLPQGYETEVGERGVMLSG 475
           Q   LF+DTVA NIA G    A + +IE AA  A   + + RLP+G++TEVGE GV+LSG
Sbjct: 437 QHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVLLSG 496

Query: 476 GQKQRISIARALLLKAEILILDDALSAVDGRTEHQILHNLRQWGSDRTVIISAHRLSALT 535
           GQ+QR++IARALL  A +LILD+A SA+D  +E  I   L      RT ++ AHRLS + 
Sbjct: 497 GQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLSTIE 556

Query: 536 EASEILVFSQGSISQRGNHDQLAAEAGWYRDMFRYQQLEAALDDVS 581
           +A +ILV  QG + +RG H +L A  G Y  +      E A  D++
Sbjct: 557 KADQILVMDQGRLVERGTHTELLAANGHYARLHAMGLDEPAKADIT 602