Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Rahnella sp. WP5

Subject, 582 a.a., Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  251 bits (642), Expect = 4e-71
 Identities = 171/574 (29%), Positives = 292/574 (50%), Gaps = 20/574 (3%)

Query: 11  FRREWRRYLGAVALLVIIAVLQLLPP-------KLVGVIID---GVTSKQMSYGVLFAWL 60
           FRR W       A L++  +  +L          L+  ++D   G T + +   +    +
Sbjct: 13  FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVI 72

Query: 61  GLMLGTAVVVYLLRYVWRVLLFGASYQLAVELRQDFFRQLSRQHPAFYLRHRTGDLIARA 120
           GLM+   +  Y+  Y     +   S ++ + +R+  F  +     AF+ +  TG L++R 
Sbjct: 73  GLMILRGITSYISSYC----ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 128

Query: 121 TNDVDRVVFAAGEGVLTLV--DSLVMGLAVLIVMATQISWELTLLSLVPMPVMAIIIKRY 178
           T D ++V  ++   ++T+V   + ++GL    +M    SW+L+++ +V  P+++I I+  
Sbjct: 129 TYDSEQVASSSSGALITVVREGASIIGL---FIMMFYYSWQLSIILVVLAPIVSIAIRVV 185

Query: 179 GDQLHSRFKTAQAAFSSLNDQAQESLTSIRMIKAFGLENHQSSQFADVAADTGAKNMRVA 238
             +  S  K  Q     +   A++ L   + +  FG +  ++ +F  V+     + M++ 
Sbjct: 186 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245

Query: 239 RVDARFDPTIYVSIGMANLLAIGGGSWMVVNGHLTLGELTSFVMYLGLMIWPMLALAWMF 298
              +  DP I +   +A    +   S+  V   LT G +T     +  ++ P+ +L  + 
Sbjct: 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305

Query: 299 NIVERGSAAYSRIRSLLQEAPAVVDGTTPLPAGRATLEAHINDFHYPENSHAALTTVTFS 358
              +RG AA   + ++L       +G   +      LE     F YP     AL  +   
Sbjct: 306 AQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLK 365

Query: 359 LQPGQMLGLCGPTGSGKSTLLSLLQRQFDVTDGDVCYHGLSLKEIQLDDWRARLAVVSQT 418
           +  G+ + L G +GSGKST+ SL+ R +D+ +G +   G  L+E  L   R ++A+VSQ 
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425

Query: 419 PFLFSDTVAQNIALGRPDA-TQEEIEEAARLASVHDDILRLPQGYETEVGERGVMLSGGQ 477
             LF+DTVA NIA  R +  ++E+IEEAAR+A   D I ++  G +T +GE GV+LSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485

Query: 478 KQRISIARALLLKAEILILDDALSAVDGRTEHQILHNLRQWGSDRTVIISAHRLSALTEA 537
           +QRI+IARALL  + ILILD+A SA+D  +E  I   L +   +RT ++ AHRLS + +A
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQA 545

Query: 538 SEILVFSQGSISQRGNHDQLAAEAGWYRDMFRYQ 571
            EI+V   G I +RG H +L A+ G Y  + + Q
Sbjct: 546 DEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579