Pairwise Alignments

Query, 1152 a.a., exodeoxyribonuclease V subunit gamma from Rahnella sp. WP5

Subject, 1160 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit from Pseudomonas putida KT2440

 Score = 1156 bits (2990), Expect = 0.0
 Identities = 614/1155 (53%), Positives = 773/1155 (66%), Gaps = 32/1155 (2%)

Query: 1    MNSGLMVLHGNHSETLRDVLVSWMAAHPLSPLENEVILVQSNGINQWLKLALARDVTD-- 58
            ++ G M++HGN  + LR ++VSWM  +PL+PLENE+ LVQSNGI QWLKLALA D  +  
Sbjct: 7    LHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPLEDD 66

Query: 59   -GGCGIAAALDIKLPARFFWQVYRAVLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVF 117
             GGCGIAAA+D++LP  F WQ+YR+VLG+ ++PE S  D+  LTWRL+RLLP L+  P F
Sbjct: 67   QGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPALIERPHF 126

Query: 118  APLARFLKDDGDMRKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPLPE 177
             PL RFL DD D+RK +QLA+RLADLFDQYQVYRADWL+DW  G  V+ T+R   + LP 
Sbjct: 127  EPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHVINTARGERKVLPP 186

Query: 178  NLLWQPQLWRALLADVPENERNTSRAALHQRFLHYAQTIPEDQRPAGLPARLVVFGISSL 237
               WQ +LWRALL DV E     SRA +HQRF+    ++  +Q PAGLP R++VFGISSL
Sbjct: 187  GNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSL--EQAPAGLPPRVIVFGISSL 244

Query: 238  PQQSLEVLAVLGRWTHIFMCVHNPCEHDWSDIIADKDLLRAERIRQLRKPGMPQVIAEDE 297
            P Q+LE LA L R++ + +CVHNPC H W+DI+ADKDLLR +  RQ RK GMP  + +  
Sbjct: 245  PAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQT 304

Query: 298  LHQHAHPLLAAWGKQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTSNGTDTLLHQLQE 357
            LHQHAHPLLAAWGKQGRDYI LL+ YD+  SY    +    RIDLF+     TLL++LQ+
Sbjct: 305  LHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSD--GRIDLFSDGSPTTLLNELQD 362

Query: 358  DILQLRPLAETIDEWPAADVQHDDSLRFFITHSAQREVEVLHDRLLAALAADPTLKARDI 417
            DIL+LRPLAE+ + WPA D   D S+RF I HS QREVE+LHD+LLA  +ADPTL+ RD+
Sbjct: 363  DILELRPLAESRERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDV 422

Query: 418  IVMVPDINGYAPHIQAVFGLMERSDPRYIPFTVADQGPRQNNPLLGALESLLELPQSRFA 477
            IVM+PDI+ YAPHI+AVFG ++R+DPRYIPFT+ DQG R   PLL ALE LL+LP SRFA
Sbjct: 423  IVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFA 482

Query: 478  VSDLLDLLDVPSVRQRFGIEEEQLPLLHRWIRAANVRWGLHAEQRQSLELPLSPEQNSWF 537
            VS++LDLLDVP+VR RFGI E  LP LHRWI  A +RWGL A QR SL LP   EQNSW 
Sbjct: 483  VSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWR 542

Query: 538  FGLQRMLLGYAVGSGEAWKNIEPLDEIGGLDAALIGPLSHLLNCLDDTWRQLREPAPPQE 597
            FGL+RMLLGYAVG GEA   IEP DEIGGLDAALIGPL  LL+ L+   + L EPA   +
Sbjct: 543  FGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQ 602

Query: 598  WGRRLRHILSQYFSEDDGEDGFILVRLHGELEIWLEACESVDLQAELPLSVVRDHWLAQF 657
            WG RL  +L  +F  +D  D F+L++L    + WLE CE+V L   LPL+VVR+ WL+  
Sbjct: 603  WGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGL 662

Query: 658  DQSGLTQPFFGGAVTFATLMPMRAIPFRHVHLLGMNDGDYPRNRVPMDFDLMGRDYRPGD 717
            DQ  L+Q F  G+V F TLMPMRAIPFR V LLGMNDGDYPR + P+DFDLM  DYRPGD
Sbjct: 663  DQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGD 722

Query: 718  RSRREDDRYLFLEALLSARERLHISWVGRSIHDNTERPPSVLVAQLRDHLAAGW------ 771
            RSRREDDRYL LEALLSAR++L++SWVGRSI DN+ERP SVL+ QLRDH+AAGW      
Sbjct: 723  RSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQ 782

Query: 772  ---KAQNGEDLLHALTTEHRLQPFNRDYFSQGSPLFSYAHEWRA-GLEAEAAAVAAQPLQ 827
                A+ GE LLHALT EH LQPF+  YF +GSPLFSYAHEW+    + E  A +   L 
Sbjct: 783  QGQPARPGEQLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGETDAQSEPGLP 842

Query: 828  PVEQEGALTLRQLSDFLSDPVRSFFRQRLNIYFELEDPGSEDQEPFDINALENWRLQDEL 887
            P +   AL+L QL+DFL  PVR FF QRL +YFE  +  + D+EPF ++ L+ +   + L
Sbjct: 843  PYQDAEALSLHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESL 902

Query: 888  IRAQKWALEAGVSRQDVLRQQLERIERRGELAPGEFAAVLSDDLAEPMDTLFASYQQVLD 947
            + A   AL    + +  LR Q  R++  G L    F  +L ++L EP+  L   +QQ+L 
Sbjct: 903  LGA---ALAEPDNAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQ 959

Query: 948  AWPQPLANE-AVEDKTGGVTFSDWLSEL-RANAAGGRARVVLESTGIIKDRAYRFDRLLP 1005
             WPQ +     V  + G      WL  + +A      +   + +T        ++ RL+ 
Sbjct: 960  RWPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIA 1019

Query: 1006 YWVAHLAGHLDGQPMHTFIVSKNGTAELPPLEIAYARELWDTLIETWKIGQLRPLPLAVK 1065
             WV HLA    G P ++ +V+ + T  L PL  A A +L   L+   +     PLP+A K
Sbjct: 1020 PWVTHLAACAAGYPYNSALVASDLTLLLAPLPQAQAAQLLGDLLVARQAAMNAPLPVAAK 1079

Query: 1066 TAFVWLKKEGTAHSATDSD-AWLAARDSYENHDPANMKFGERDSNAYLARAWPDFAALWS 1124
            TAF WL ++       D+D A  AA  +YE  +     FGER  +  LAR + DFAAL +
Sbjct: 1080 TAFAWLAQD-------DADKALAAAARAYEGDE--RTSFGERSESIALARQFRDFAALTA 1130

Query: 1125 DGEFARLADVLLAPL 1139
            D  F    + L  PL
Sbjct: 1131 DETFEGWCETLYRPL 1145