Pairwise Alignments

Query, 1152 a.a., exodeoxyribonuclease V subunit gamma from Rahnella sp. WP5

Subject, 1122 a.a., exonuclease V (RecBCD complex), gamma chain from Escherichia coli BL21

 Score =  603 bits (1556), Expect = e-176
 Identities = 420/1162 (36%), Positives = 597/1162 (51%), Gaps = 119/1162 (10%)

Query: 5    LMVLHGNHSETLRDVLVSWMAAHPLS-PLENEVILVQSNGINQWLKLALARDVTDGGCGI 63
            L V H N  + L  ++   +    L  P E E+ILVQS G+ QWL++ L++       GI
Sbjct: 2    LRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF-----GI 56

Query: 64   AAALDIKLPARFFWQVYRAVLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVFAPLARF 123
            AA +D  LPA F W ++  VL   ++P+ S F++  ++W+L+ LLP+LL    F  L  +
Sbjct: 57   AANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHY 114

Query: 124  LKDDGDMRKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPLPENLLWQP 183
            L DD D RKL QL+ + ADLFDQY VYR +WL  W  G  V        E L E   WQ 
Sbjct: 115  LTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLV--------EGLGEAQAWQA 166

Query: 184  QLWRALLADVPE-NERNTSRAALHQRFLHYAQTIPEDQRPAGLPARLVVFGISSLPQQSL 242
             LW+AL+    E  +    RA L+QRF+   ++      P GLP+R+ + GIS+LP   L
Sbjct: 167  PLWKALVEYTHELGQPRWHRANLYQRFIETLESATTC--PPGLPSRVFICGISALPPVYL 224

Query: 243  EVLAVLGRWTHIFMCVHNPCEHDWSDIIADKD------LLRAERIRQLRKPGMP------ 290
            + L  LG+   I +   NPC + W DI   KD      LL  +R        +P      
Sbjct: 225  QALQALGKHIEIHLLFTNPCRYYWGDI---KDPAYLAKLLTRQRRHSFEDRELPLFRDSE 281

Query: 291  ---QVIAEDELHQHAHPLLAAWGKQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTSNG 347
               Q+   D      +PLLA+WGK GRDYI LL++ ++ +            +D F    
Sbjct: 282  NAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE-----------LDAFVDVT 330

Query: 348  TDTLLHQLQEDILQLRPLAET---IDEWPAADVQH-----DDSLRFFITHSAQREVEVLH 399
             D LLH +Q DIL+L   A     I+E+  +D +      D S+ F + HS QREVEVLH
Sbjct: 331  PDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLH 390

Query: 400  DRLLAALAADPTLKARDIIVMVPDINGYAPHIQAVFGLMERSDPRYIPFTVADQGPRQNN 459
            DRLLA L  DPTL  RDIIVMV DI+ Y+P IQAVFG       RY+P+ ++D+  RQ++
Sbjct: 391  DRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSH 448

Query: 460  PLLGALESLLELPQSRFAVSDLLDLLDVPSVRQRFGIEEEQLPLLHRWIRAANVRWGLHA 519
            P+L A  SLL LP SRF   D+L LLDVP +  RF I EE L  L +W+  + +RWG+  
Sbjct: 449  PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD 508

Query: 520  EQRQSLELPLSPEQNSWFFGLQRMLLGYAVGSGEA-WKNIEPLDEIGGLDAALIGPLSHL 578
            +  + LELP +  Q++W FGL RMLLGYA+ S +  W+++ P DE  GL A L+G L+ L
Sbjct: 509  DNVRELELPATG-QHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASL 567

Query: 579  LNCLDDTWRQLREPAPPQEWGRRLRHILSQYFSEDDGEDGFILVRLHGELEIWLEACESV 638
            L  L+   R L +  P +EW    R +L+ +F  D   +  + +     +E   +A  + 
Sbjct: 568  LMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTL-----IEQQWQAIIAE 622

Query: 639  DLQAE----LPLSVVRDHWLAQFDQSGLTQPFFGGAVTFATLMPMRAIPFRHVHLLGMND 694
             L A+    +PLS++RD    + DQ  ++Q F  G V   TLMPMR+IPF+ V LLGMND
Sbjct: 623  GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND 682

Query: 695  GDYPRNRVPMDFDLMGRDYRPGDRSRREDDRYLFLEALLSARERLHISWVGRSIHDNTER 754
            G YPR   P+ FDLM +  + GDRSRR+DDRYLFLEAL+SA+++L+IS++GRSI DN+ER
Sbjct: 683  GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSER 742

Query: 755  PPSVLVAQLRD-----HLAAGWKAQNGED----LLHALTTEHRLQPFNRDYFSQGSPLFS 805
             PSVLV +L D     H   G +A N ++    +   LT  H   PF+   +  G    S
Sbjct: 743  FPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-S 801

Query: 806  YAHEW--RAGLEAEAAAVAAQPLQPVEQEGALTLRQLSDFLSDPVRSFFRQRLNIYFELE 863
            YA EW   A    +A +   QPL P      + L  L  F + PVR+FF+ RL + F  E
Sbjct: 802  YAREWLPAASQAGKAHSEFVQPL-PFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTE 860

Query: 864  DPGSEDQEPFDINALENWRLQDELIRAQKWALEAGVSRQDVLRQQLERIERRGELAPGEF 923
            D    D EPF +  L  +++  +L+ A        +  QD   +   R    G+L  G F
Sbjct: 861  DSEIPDTEPFILEGLSRYQINQQLLNA--------LVEQDDAERLFRRFRAAGDLPYGAF 912

Query: 924  AAVLSDDLAEPMDTLFASYQQVLD---AWPQPLANEAVEDKTGGVTFSDWLSELRANAAG 980
              +  +   + M       QQ+ D   A  QP  +  ++    GV  + WL +++ +   
Sbjct: 913  GEIFWETQCQEM-------QQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPD--- 962

Query: 981  GRARVVLESTGIIKDRAYRFD--RLLPYWVAHLAGHLD-GQPMHTFIVSKNGTAELPPLE 1037
                      G+++ R       + +  W+ HL      G       + K+G    PPL 
Sbjct: 963  ----------GLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLA 1012

Query: 1038 IAYARELWDTLIETWKIGQLRPLPLAVKTAFVWLKK--EGTAHSATDSDAWL-AARDSYE 1094
               A      LIE ++ G   PL +  ++   WLK   +    +  D D+ L  AR  + 
Sbjct: 1013 AEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFL 1072

Query: 1095 NHDPANMKFGERDSNAYLARAW 1116
                 NM       + +  R W
Sbjct: 1073 QAYEGNMMVRGEGDDIWYQRLW 1094