Pairwise Alignments

Query, 684 a.a., exodeoxyribonuclease V subunit alpha from Rahnella sp. WP5

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  411 bits (1057), Expect = e-119
 Identities = 284/674 (42%), Positives = 375/674 (55%), Gaps = 83/674 (12%)

Query: 11  QLLASWVECGWLRELDRALVTFLAKEAPDAHPLLLLATALTSYQLGRGHVCLDLQATLDD 70
           QLL + VE   LR LD   V F    A D HP + LA AL S+  G GHVCL L    ++
Sbjct: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61

Query: 71  SAFSLSLPPEGDHADGAVIRPAAVLDDLSLQEWLAALVHPTLVGHHEGNSPLVLTGQRLY 130
            A   S P          +    V +   LQ W   L+    V   +  +P++L G RLY
Sbjct: 62  EA---SHP----------LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLY 108

Query: 131 LRRYWQYEQNVRAAIEQRLARSALHTLPVES--LRAPLTALFPADAKSDIANWQKLACAL 188
           L R W  E+ V      R      H + V+   L   L  LFP    SD  NWQK+A A+
Sbjct: 109 LNRMWCNERTVA-----RFFNEVNHAIEVDEALLAQTLDKLFPV---SDEINWQKVAAAV 160

Query: 189 AAGSAFSIITGGPGTGKTTTVVRLLALLQTLALEENGQPLRIRLAAPTGKAAARLNESIA 248
           A     S+I+GGPGTGKTTTV +LLA L  +A   +G+  RIRLAAPTGKAAARL ES+ 
Sbjct: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLG 217

Query: 249 GAVSKLDLSALGNGNAVRESINTDVVTLHRLLGSRPDTRHFRHHPGNPLMLDVLVVDEAS 308
            A+ +L LS     +  ++ I  D  TLHRLLG++P ++  RHH GNPL LDVLVVDEAS
Sbjct: 218 KALRQLPLS-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272

Query: 309 MVDLEMMAALLAALPEQARLILLGDKDQLASVEAGALLSELCQRANGGHYLPHTRDWLQS 368
           M+DL MM+ L+ ALP+ AR+I LGD+DQLASVEAGA+L ++C  AN G      R  L  
Sbjct: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-LSR 331

Query: 369 VTGEQVPDSLVDPQGTAMDQAVVMLRHSYRFDAQSGIGQLAEAVNDGDVKALKQVWKHGY 428
           +TG  VP      +  ++  ++ +L+ SYRF + SGIGQLA A+N GD  A+K V++  +
Sbjct: 332 LTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390

Query: 429 ADLAQLTLSADDDAELRDWVVKGGAKQFPTAARREGVEPPVGYQHYLNVMIQARPADNEP 488
            D+ +  L + +D                  A  E  E   GY  YL+ ++QAR    EP
Sbjct: 391 TDIEKRLLQSGED----------------YIAMLE--EALAGYGRYLD-LLQARA---EP 428

Query: 489 PEAFNRWAARVLLAYSQFQLLCALRGGRWGVEELNQRIADILRKEGLL--KASIGWYPGR 546
                     ++ A++++QLLCALR G +GV  LN+RI   ++++  +       WY GR
Sbjct: 429 D--------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480

Query: 547 PVLVTRNDYSQRLMNGDIGITLEIPHRLADGTVVPTLRVAFLAGDGTQDIRWVMPGRLQA 606
           PV++ RND +  L NGDIGI L+       GT     RV F   DG  +I+ V P RL  
Sbjct: 481 PVMIARNDSALGLFNGDIGIALD----RGQGT-----RVWFAMPDG--NIKSVQPSRLPE 529

Query: 607 VETVFAMTVHKSQGSEFTHTALLLPENLSPILTRELIYTGITRARHWFSLGCVGGMNAVL 666
            ET +AMTVHKSQGSEF H AL+LP   +P++TREL+YT +TRAR   SL        +L
Sbjct: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL---YADERIL 586

Query: 667 PDAVKRRVLRASGL 680
             A+  R  R SGL
Sbjct: 587 SAAIATRTERRSGL 600