Pairwise Alignments

Query, 587 a.a., DEAD/DEAH box helicase from Rahnella sp. WP5

Subject, 586 a.a., DNA damage response helicase (yejH or radD) (from data) from Escherichia coli BW25113

 Score =  968 bits (2503), Expect = 0.0
 Identities = 472/585 (80%), Positives = 516/585 (88%)

Query: 3   VFTLRPYQQDAVDATLRHFRQHDEPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKEL 62
           +FTLRPYQQ+AVDATL HFR+H  PAVIVLPTGAGKSLVIAELAR+ARGRVLVLAHVKEL
Sbjct: 2   IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61

Query: 63  VAQNHSKYLSYGLEADIFAAGLNLKQSSGKVIFGSVQSVAPNLAEFSGEFSLLIVDECHR 122
           VAQNH+KY + GLEADIFAAGL  K+S GKV+FGSVQSVA NL  F GEFSLLIVDECHR
Sbjct: 62  VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121

Query: 123 ISDDDNSQYQQIIGHLKAQNPRLRLLGLTATPYRLGKGWIYQYHHQGIVRGDANSLFRDC 182
           I DD+ SQYQQI+ HL   NP LRLLGLTATP+RLGKGWIYQ+H+ G+VRGD  +LFRDC
Sbjct: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181

Query: 183 IYELPLRYMIKNGFLVPPERLDMPVVSYDFSRLQASSNGLFSEADLNDELRQQKRITPHI 242
           IYELPLRYMIK+G+L PPERLDMPVV YDFSRLQA SNGLFSEADLN EL++Q+RITPHI
Sbjct: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241

Query: 243 ISQIIEFAQDRKGVMIFASTVEHAGEIFGLLPKGEAALISAQTHAVERDRLITAFKAQQL 302
           ISQI+EFA  RKGVMIFA+TVEHA EI GLLP  +AALI+  T   ERD LI  FKAQ+ 
Sbjct: 242 ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRF 301

Query: 303 RYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 362
           RYLVNV+VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH
Sbjct: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361

Query: 363 DLFTPEVGSHKPAGDNKPVQVFCPACGFANIFWGKTTEDGTVIEHFGRRCQGVLEDDEGN 422
           DL+ PEVG+ K   DN PVQVFCPACGFAN FWGKTT DGT+IEHFGRRCQG  EDD+G+
Sbjct: 362 DLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGH 421

Query: 423 REQCDFRFRFKSCPHCGAENDIAARRCHQCQEILVDPDDMLKAALRLKDALVLRCGGMNL 482
           REQCDFRFRFK+CP C AENDIAARRC +C  +LVDPDDMLKAALRLKDALVLRC GM+L
Sbjct: 422 REQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSL 481

Query: 483 QNGRDDKGEWLKITYYDEDGADVSERFRLTTPAQRMAFLHNFLRPHQRAPGVPLEWNTAA 542
           Q+G D+KGEWLKITYYDEDGADVSERFRL TPAQR AF   F+RPH R PG+PL W TAA
Sbjct: 482 QHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAA 541

Query: 543 DIVAQQILLRHPDFVVARMKGQFWQVREKMFDYEGRYRRANELRG 587
           DI+AQQ LLRHPDFVVARMKGQ+WQVREK+FDYEGR+R A+ELRG
Sbjct: 542 DILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586