Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  104 bits (260), Expect = 3e-27
 Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 6/277 (2%)

Query: 31  IAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAYQVGASTPDPAQQVKVIEDLIAKKVDAII 90
           IA + K+ G+ +FT    G +EA + L ++    G + P  + QV+++ + + +  DAII
Sbjct: 37  IAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAII 96

Query: 91  VVPNDAKVLEPVLKKARDQGIVVLTHESPDQQIGQWDIETIDSQKYAEANMDELAKDM-- 148
           V       L P LK+A  +G+ +LT +S  +   +       + K   + + E+A     
Sbjct: 97  VSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVD 156

Query: 149 GGKGGYAIYVGSLTVPLHNAWADAAIKYQKEKYPDMHEVTSRLPVAENIDKSYSTTLDLM 208
             K   A +  S TV   N W   A     +++P    VT++     +  KS  T   ++
Sbjct: 157 KEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGY-NDATKSLQTAEGII 215

Query: 209 KTYPDLKGIIGFGSLGPIGAGQAVQQKRAKNKIAVVGIAMPAQAAPYLMRGDIKKVLLWD 268
           K YPDL  II   +     A QA +  + +N +A+VG + P    PY+ RG +K+  LWD
Sbjct: 216 KAYPDLDAIIAPDANALPAAAQAAENLK-RNNLAIVGFSTPNVMRPYVQRGTVKEFGLWD 274

Query: 269 PKDAGYALVTVADQMLQG--KEVTKDLSIDGLGKADV 303
               G   V VA+ +L+     V   L I G+GK  V
Sbjct: 275 VVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTV 311