Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 340 a.a., AI2 transporter (NCBI) from Escherichia coli BW25113

 Score =  100 bits (250), Expect = 4e-26
 Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 6/277 (2%)

Query: 31  IAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAYQVGASTPDPAQQVKVIEDLIAKKVDAII 90
           IA + K+ G+ +FT    G ++A ++L V+    G + P  + QV++I + + +  +AII
Sbjct: 30  IAFIPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAII 89

Query: 91  VVPNDAKVLEPVLKKARDQGIVVLTHESPDQ-QIGQWDIETIDSQKYAEANMDELAKDMG 149
           V       L P LK+A  +G+ VLT +S  + +   + I      +     +D  A+ + 
Sbjct: 90  VSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVN 149

Query: 150 -GKGGYAIYVGSLTVPLHNAWADAAIKYQKEKYPDMHEVTSRLPVAENIDKSYSTTLDLM 208
             K   A +  S TV   N W   A     +++P    VT++     +  KS  T   ++
Sbjct: 150 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGY-NDATKSLQTAEGIL 208

Query: 209 KTYPDLKGIIGFGSLGPIGAGQAVQQKRAKNKIAVVGIAMPAQAAPYLMRGDIKKVLLWD 268
           K Y DL  II   +     A QA +  +  +K+A+VG + P    PY+ RG +K+  LWD
Sbjct: 209 KAYSDLDAIIAPDANALPAAAQAAENLK-NDKVAIVGFSTPNVMRPYVERGTVKEFGLWD 267

Query: 269 PKDAGYALVTVADQML-QGKEVTKD-LSIDGLGKADV 303
               G   V VAD +L +G   T D L I G+G+ +V
Sbjct: 268 VVQQGKISVYVADALLKKGSMKTGDKLDIKGVGQVEV 304