Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 296 a.a., Ribose import binding protein RbsB from Escherichia fergusonii Becca

 Score = 66.6 bits (161), Expect = 7e-16
 Identities = 73/296 (24%), Positives = 128/296 (43%), Gaps = 14/296 (4%)

Query: 4   NLALVSACVVSACMLFTTPSFAAKPYDIAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAYQ 63
           N+ L+ + ++ +  LF+  S A K Y I         P++  +   +KE A+K +VN   
Sbjct: 3   NIKLLGSAMLVSLALFSQSSLA-KEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNL-S 60

Query: 64  VGASTPDPAQQVKVIEDLIAKKVDAIIVVPNDAKVLEPVLKKARDQGIVVLTHESPDQQI 123
           V  +  D  +Q+  +ED I KKVDAII+ P D+K ++  + KA   GI V+T +   + +
Sbjct: 61  VSIANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGV 120

Query: 124 GQWDIETIDSQKYAEANMDELAKDMGGKGGYAIYVGSLTVPLHNAWADAAIKYQK--EKY 181
                   D+          + K + GKG  AI    ++ P   +       ++K     
Sbjct: 121 PVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAI----ISYPALQSVVARVDGFKKGLSDT 176

Query: 182 PDMHEVTSRLPVAENIDKSYSTTLDLMKTYPDLKGIIGFGSLGPIGAGQAVQQKRAKN-K 240
           PD+  V  +  +     ++ +T  ++M+   +L G+ GFG    + A   +  K A N  
Sbjct: 177 PDIKIVAEQPGITR--AEALTTAQNIMQANANLNGLFGFGDDAALAA--VIAAKSAHNDN 232

Query: 241 IAVVGIAMPAQAAPYL-MRGDIKKVLLWDPKDAGYALVTVADQMLQGKEVTKDLSI 295
           I ++G     +A   +        V+   P   G   +  A   L GK V K + +
Sbjct: 233 IKIIGFDGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPV 288