Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 348 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  200 bits (509), Expect = 4e-56
 Identities = 109/270 (40%), Positives = 155/270 (57%), Gaps = 2/270 (0%)

Query: 18  LFTTPSFAAKPYDIAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAYQVGASTPDPAQQVKV 77
           L TT S   K Y IA V KV GI WF RM  GV++       + + VG S  D A QV++
Sbjct: 34  LITTAS--GKKYTIATVVKVDGIAWFDRMRDGVEQFKGDTGNDVWMVGPSQADAAAQVQL 91

Query: 78  IEDLIAKKVDAIIVVPNDAKVLEPVLKKARDQGIVVLTHESPDQQIGQWDIETIDSQKYA 137
           +E+LIA+ VDAI +VP   + +EPVLKKARD+GIVV++HE+ + Q   +DIE  D++ Y 
Sbjct: 92  VENLIAQGVDAIAIVPFSVEAVEPVLKKARDRGIVVISHEASNIQNVDFDIEAFDNKAYG 151

Query: 138 EANMDELAKDMGGKGGYAIYVGSLTVPLHNAWADAAIKYQKEKYPDMHEVTSRLPVAENI 197
              M EL K MGGKG Y   VGSLT      W D A++YQK  +P+M + T RL   ++ 
Sbjct: 152 ANLMKELGKSMGGKGKYVATVGSLTSKSQMEWIDGAVEYQKANFPEMSQATERLETYDDA 211

Query: 198 DKSYSTTLDLMKTYPDLKGIIGFGSLGPIGAGQAVQQKRAKNKIAVVGIAMPAQAAPYLM 257
           +  Y+   + M  YPD+ GI+G       GAG+ + +     K+   G  + + A  Y+ 
Sbjct: 212 NTDYTKLKEAMTAYPDITGILGAPMPTSAGAGRLIAEGGLSGKVFFSGTGLVSVAGEYIK 271

Query: 258 RGDIKKVLLWDPKDAGYALVTVADQMLQGK 287
             +I+ +  WDP  AGYA+  +A  +L+ K
Sbjct: 272 NDNIQYIQFWDPAVAGYAMNMLAVAVLEKK 301