Pairwise Alignments

Query, 328 a.a., autoinducer 2 ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score = 71.2 bits (173), Expect = 3e-17
 Identities = 85/305 (27%), Positives = 132/305 (43%), Gaps = 26/305 (8%)

Query: 3   FNLALVSACVVSACMLFTTPSFAAKPYDIAVVAKVTGIPWFTRMEVGVKEAAQKLDVNAY 62
           F+ AL +  +  A +       A K   IA+V       +F +M  G ++AA++  V   
Sbjct: 9   FSAALAATVLAGATLSAGLVQAAEKT--IALVQINQQALFFNQMNEGAEKAAKEAGVKLV 66

Query: 63  QVGASTPDPAQQVKVIEDLIAKKVDAIIVVPNDAKVLEPVLKKARDQGIVVLT-----HE 117
              A+  DPA Q   IE  I +KVD I VV  D   + P +K+A    I V+       E
Sbjct: 67  IFNANN-DPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAILPE 125

Query: 118 SPDQ-QIGQWDIETIDSQKYAEANM-----DELAKDMGGKGGYAIYVGSLTVPLHNAWAD 171
            P + QIG      +D+ K A A+M     D +  DMGGK    + VG+L   + N    
Sbjct: 126 GPQKAQIG------VDNGK-AGADMGKFFLDYVKSDMGGKAKIGV-VGALNSFIQNIRQK 177

Query: 172 AAIKYQKEKYPDMHEVTSRLPVAENI-DKSYSTTLDLMKTYPDLKGIIGFGSLGPIGAGQ 230
                 K+K       T+ +   +N+ D + S   +L+   PD+  I   G    +GA  
Sbjct: 178 GFEDTIKDK---TGITTAGVVDGQNVQDTALSAAENLITGNPDMTAIYATGEPALLGAVA 234

Query: 231 AVQQKRAKNKIAVVGIAMPAQAAPYLMRGDIKKVLLWDPKDAGYALVTVADQMLQGKEVT 290
           AV+ +  +  I V G  +  QA   +  G +  V+  DP + G A V     +  G  V 
Sbjct: 235 AVESQSKQKDIKVFGWDLTKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGGTVE 294

Query: 291 KDLSI 295
           K +++
Sbjct: 295 KTIAV 299