Pairwise Alignments

Query, 426 a.a., sugar ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 440 a.a., ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) from Pseudomonas simiae WCS417

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 93/368 (25%), Positives = 153/368 (41%), Gaps = 25/368 (6%)

Query: 10  SLLALSVSLFSCASFAATKLTLVEVITSPARTEMLQKMLTAYKTQHPDVEIDVVSLPWGQ 69
           S   ++    S  SF A  LT+  V  S      +QK+   ++ +HP+++++ V L    
Sbjct: 11  STCMMTCMTLSAVSFGAQTLTIATVNNSDMIR--MQKLSKTFEAEHPEIKLNWVVLEENV 68

Query: 70  AFEKLGTMI--QSGQYPDVVEMPDTWQGLYASNGMLADLEPRLKGWSGTPDLTD--KTLT 125
             ++L T I  Q GQ+ DV+ +      L+ + G L   EP +K    + DL D   ++ 
Sbjct: 69  LRQRLTTDIATQGGQF-DVLTIGMYEAALWGAKGWL---EP-MKDLPASYDLDDVFPSVR 123

Query: 126 MARSSGGTATMIPYGFYLRAMFWNKKLFQQAGLT-DAPKTMDEFMADAKKISALGNGISG 184
              S  G+   +P+       ++   LF+ AGLT     T  +    A K++       G
Sbjct: 124 DGLSVKGSLYALPFYAESSITYYRTDLFKDAGLTMPEHPTWTQIGEFASKLTDKTKEQYG 183

Query: 185 YCMRGGVG-GTNAWMMFMAAMNGSPDFFDKEGNSTLTKPGAIKGAQFLVDMYQKGYAPKD 243
            C+RG  G G N  ++   A      +FD++       P       F VD  +K   P  
Sbjct: 184 LCLRGKAGWGENMALITTLANGYGARWFDEKWQPEFNGPEWKDALNFYVDNMKKSGPPGA 243

Query: 244 SVNWGFNEIVSGFYSGKCAM-LDQD-PDALIAIKNSMNPDD---FSVAPMPLGPNGKAYP 298
           S N GFNE ++ F SGKCA+ +D     + +  K      D   F+ AP      G ++ 
Sbjct: 244 SSN-GFNENLALFNSGKCAIWVDASVAGSFVTDKTQSKVADHVGFTFAPHEKTDKGTSW- 301

Query: 299 TIGYTGWSMF--KQGKNQDQSWDLISFLSNKENNLTWSKFVGTLPIYKGAEQDAYYHAPQ 356
                 WS+      K +D +    S+ ++KE     +K  G   +  G  +  Y     
Sbjct: 302 ---LYSWSLAIPTSSKAKDAAKVFTSWATSKEYGELVAKTDGIANVPPGTRKSTYNDEYM 358

Query: 357 FAGWFAEL 364
            A  FA++
Sbjct: 359 KAAPFAKV 366