Pairwise Alignments

Query, 820 a.a., TonB-dependent siderophore receptor from Rahnella sp. WP5

Subject, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  428 bits (1101), Expect = e-124
 Identities = 280/848 (33%), Positives = 446/848 (52%), Gaps = 93/848 (10%)

Query: 15  SKPVATFMHMMLCVPVLSFATSMVTS--VQAAEITARKNSYSIPAAPLASQLNQFAAQSG 72
           SK +   +++ L    L+ A S+  +  VQA EI        IPA  L S L +F  Q+ 
Sbjct: 11  SKALTRALNINLLPSALALAVSLPVAGYVQAQEI-----ELDIPAQALGSALQEFGRQAN 65

Query: 73  IYLASDATLTNGLSGTALNGTYTLTEGLSRLL----TAHGLQADQQFNGSYVLKMIPEGE 128
           + +    T   G + TA+ G     + ++ LL    T H L  +     +       E  
Sbjct: 66  LQVLYSPTDVAGKNSTAIKGKLDPQQAINTLLAGTSTTHSLSGNALTVTAAGASAGLELS 125

Query: 129 ELVVVGDIDYGSMTEDTRSYTTRSMSAATRLNLSPRETPQSVSVVTRQRMNDQNMTSLDD 188
              V G++  G++TE + SYT  +++ ATRL L+PRETPQS++V+TRQ + D  + ++DD
Sbjct: 126 PTQVTGNV-LGNITEGSGSYTPGTIATATRLTLTPRETPQSITVITRQHIEDFGLNNVDD 184

Query: 189 AMRHVTGVNVINESSYQSRYQSRGFTMDNIQEDGISSSFQNSLAGMGYAEASTESPDLAI 248
            MRH  G+ V    + ++ Y SRGF++++ Q DGI S+ +N    +GY+  +T S D+AI
Sbjct: 185 VMRHTPGITVSAYDTDRTNYYSRGFSVNSFQYDGIPSTVRN----VGYSAGNTLS-DMAI 239

Query: 249 YDHLEVLRGASGLTQGSGEPGGTVNMVRKRPTYDFRSSVSASAGSWDNYRSEVDISGPLN 308
           YD +EVL+GA+GL  G+G  G T+N++RK+PT +F+  V   AGSWDNYRSEVD+SGPL 
Sbjct: 240 YDRVEVLKGATGLLNGAGSLGATINLIRKKPTSEFKGHVQLGAGSWDNYRSEVDVSGPLT 299

Query: 309 DDASLRGRLVGVLQKKDSFTDYVNSDRQVLFGTMAYDFTPQTTLTTGISWQKTDTVPN-- 366
           D  ++RGR V   Q K SF D+ +   +  +G   +D +P T LT G  +Q  D +P   
Sbjct: 300 DSGNVRGRAVAAYQDKKSFMDHYSRKTETYYGITEFDLSPDTMLTVGFDYQ--DNIPKGS 357

Query: 367 --LYGVPMSTNYSSLN-LPRSTFLGASWNNITFEKTNGFAELEHYFDNEWVAKSSLNYTS 423
                 P+  +  S+N +PRS   G +W++        FA LEH   + WV K  L++  
Sbjct: 358 SWSGSFPLVNSNGSINKMPRSYNNGTTWSSWEQNTRTAFAMLEHDMGDGWVTKFQLDHKI 417

Query: 424 ASAQG-----KFIGVYGNGTQGVNDSGDARLNNYLQRHNRSSQYGLNVNLSGPFEFLKRE 478
            S        +F+    +GT  +N           +    +     ++  +GPF    RE
Sbjct: 418 NSYHADLGSIQFVQPAADGTAEINGQ---------KYTGETKSTSADLYATGPFSLFGRE 468

Query: 479 HELVLGGD-----YQKENFSNLFGSLGNTSKVNIYSWDPESLSEPDWDYTRRY-QYNVYQ 532
           HELV+GG      +Q + + +     GN  KV+ Y+W+   +++P +   ++Y    + Q
Sbjct: 469 HELVVGGSIGTSRWQGKGYWSPEWPGGN--KVDFYNWNGH-IAKPIYGPVQQYIDDTIRQ 525

Query: 533 RGLYATTRLSLANDWKLILGSRYSDFTYDSYFTNLTTGAMIGHSNYKVKGKTIPYGGLLW 592
            G Y TTRL++ +D  +ILG R +++    + T +       + +YK  G+ +PY G+++
Sbjct: 526 TGYYMTTRLNVMDDLHVILGGRVANY----HVTGI-------NPSYKETGRFVPYAGVVY 574

Query: 593 DFAKDYTWYVSYSEIYKPQ--SMQDASGNFLPPVTGSNYETGVKGEFFEGALNASVALFR 650
           D   + + Y SY++I++PQ  + +D +   L P  G NYE G+KG+F +G LNASVA F 
Sbjct: 575 DLNDNISAYASYTDIFQPQESTYKDRNQKLLEPDEGQNYELGLKGDFLDGRLNASVAYFE 634

Query: 651 IIQKNNAMSGVGCDDCY-----------IADGKVQSQGIEMEVSGQLAEGWQVYSGYTLN 699
           + + N A+S    DD Y               K  ++G E EVSG+L+ GWQV  GYT  
Sbjct: 635 VHETNRAIS----DDAYNNQTPAPSNYAFKGSKAVTKGYEAEVSGELSPGWQVQGGYT-- 688

Query: 700 NSKYLEAADTQKGTNFSKHTPQHLIRVYSSYQLPGRWEKWSAGVGLTAQTS--------- 750
             K +   + +K + F    P+H + + ++Y+L G  ++++ G GL  Q+          
Sbjct: 689 -HKIVRDDNDKKISTFE---PEHQVNLNTTYKLKGDLDQFTIGGGLRWQSKGWYEIYNSP 744

Query: 751 TTTNYDVSQGGYTIFNANIGYQYSKQIRLSLNGNNLTDKEYYVGVSNRHRGGNNFYGDPR 810
             TN D++Q  Y + +    YQ +K +  ++N NN+ DK YY  V   +      YG+PR
Sbjct: 745 LNTNQDITQKAYWLVDLMTRYQVTKNLSATVNFNNIFDKSYYTNVGFYNSAA---YGEPR 801

Query: 811 NFMFNVKW 818
           N MF+ +W
Sbjct: 802 NVMFSTRW 809