Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Rahnella sp. WP5

Subject, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

 Score = 1093 bits (2826), Expect = 0.0
 Identities = 578/935 (61%), Positives = 695/935 (74%), Gaps = 24/935 (2%)

Query: 4   IAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYTPSHVAVVFD 63
           +++ PL+LVDGSSYLYRA+HA PPLT S G PTGA+ GVLNML+SL  QY  S  AVVFD
Sbjct: 1   MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD 60

Query: 64  AKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGTLAL 123
           AKG TFRD +F +YK++RP MPDDLR QIEPLH  VKA+G PLL V GVEADDVIGTLA 
Sbjct: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120

Query: 124 EAELAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFLALM 183
            +   G  V+ISTGDKDMAQLV   +TL+NTM  ++L    V EK+GV P  IIDFLALM
Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180

Query: 184 GDSSDNIPGVPGVGEKTAQALLQGIGG-LDALYADLDKVSTLSFRGAKTMAAKLADNKDV 242
           GD  DNIPGVPGVGEKTA  LL GIGG L  LYA+LDKV  L+ RGAKT+ AKL +++D 
Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA 240

Query: 243 AYLSYQLATIKTDVKLDLTCAELTVSEPDADELHKLFGRYEFKRWLADVESGTWLSGKKS 302
           A+LSY+LATIK DV LD+    L   EPD + L  L+   EFK W+A+++          
Sbjct: 241 AFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQ---------- 290

Query: 303 AGKAPAAAKKSAQAEDTTSAAVIEPNQLSQDGYVTILDQATLDEWIGYLKGSEVFAFDTE 362
                   + +A+A D  + AV EP    +  Y TILDQA  D W+  L+ + +FAFDTE
Sbjct: 291 --------RDAAKAGDDVAPAV-EPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTE 341

Query: 363 TDGLDTLTANLIGLSFATEAGKAAYLPVAHDYLDAPVQLDRDEVLKQLKPILEDEKQRKV 422
           T GLD   A L+GLSFA E  +AAY+P+AHDY  APVQLDR+ VL  LKP+LED  + KV
Sbjct: 342 TTGLDAQQAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKV 401

Query: 423 GQNLKFDRGVLLRYD--IELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEE 480
           GQN K+D  +L      IE++G+A+DTMLESYVL+S + RHDMDSLA +YL H T++FE+
Sbjct: 402 GQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFED 461

Query: 481 IAGKGKNQLTFNQIALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPLVP 540
           IAGKG  QLTFNQI L++A PYAAEDAD+TL+LH AL  R+A++ S++ V  DIEMPLVP
Sbjct: 462 IAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVP 521

Query: 541 VLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILYEKQK 600
           VL+ IER G L+D  +L   S EL +++ ELE +A+ELA E FNL S KQL  ILY+K  
Sbjct: 522 VLARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLG 581

Query: 601 LPILKKTPGGAPSTNEEVLAELALN-YPLPKVILEYRGLAKLKSTYTDKLPLMINPQSGR 659
           +P+L KT  G PST E VL ELAL  YPLP+V+++YR L+KLKSTYTDKLP  INP++GR
Sbjct: 582 MPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGR 641

Query: 660 VHTSYHQAVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIM 719
           +HTSY QAV ATGRLSSSDPNLQNIP+R  EGRRIRQAFIA   Y +LAADYSQIELRIM
Sbjct: 642 IHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIM 701

Query: 720 AHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFGLS 779
           AHL+KDEGLL AF    D+HRATAAEVFG  LE V+ +QRRSAKAINFGLIYGMSAFGL+
Sbjct: 702 AHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLA 761

Query: 780 RQLNIPRKESQRYMDLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAM 839
           +Q+ + RK+SQ Y+D YF RYPGVL YMERTR QA+EQG+VETL GRRLYLPDI + N  
Sbjct: 762 KQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPA 821

Query: 840 RRKGAERAAINAPMQGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDV 899
            RKGAER AINAPMQGTAADIIKRAM+ V +WL +     AR+I+QVHDELV EV +D V
Sbjct: 822 LRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLD-ARVILQVHDELVLEVREDLV 880

Query: 900 EVASEKIRNLMEASMTLAVPLKVDVGTGENWDQAH 934
           +   ++IR  M  +  L VPL V+ G G NWD+AH
Sbjct: 881 QQVKDEIRQHMSQAAQLDVPLLVEAGVGANWDEAH 915