Pairwise Alignments

Query, 304 a.a., branched-chain amino acid ABC transporter permease from Rahnella sp. WP5

Subject, 309 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  249 bits (636), Expect = 6e-71
 Identities = 133/308 (43%), Positives = 197/308 (63%), Gaps = 14/308 (4%)

Query: 6   LQQLFNGITLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLC--AIALALLSFFGL 63
           LQQ+ NG+ LG++Y L+A+GYTMVYGIIG+INFAHG+V M+ A      I   + +  GL
Sbjct: 5   LQQIINGLVLGSMYALVALGYTMVYGIIGLINFAHGDVLMVGALTSWTVIGWMMNASTGL 64

Query: 64  HSFPLLILGTLVFTIVVTGVYGWAIERIAYKPLRNSTRLAPLISAIGMSLILQNYAQISQ 123
            ++ +L L T++  +VV     + IE++AY+PLRNS RLAPLI+AIGMSL+LQ +A I  
Sbjct: 65  PTWLILFLATII-AMVVCATLNFTIEKLAYRPLRNSNRLAPLITAIGMSLLLQTFAMIIW 123

Query: 124 GPRQQGIPTMLDGAFRFHIGESFVQMTYTKIFILVASLAGMLVLSWIISNTKLGRMCRAV 183
            P  +  P+ML    R  I      ++ T++ IL  +   +  L W+++ T LGR  RA 
Sbjct: 124 APNPKSYPSMLS---REPIAIGGAVVSVTQVVILATTAVTLAFLMWLVNRTNLGRAMRAT 180

Query: 184 QQDRKMASILGINTDRIISLVFMIGAAMAGLAGVLVTMNYGTFDFYAGFIIGIKAFTAAV 243
            ++ ++A+++GI  D +IS  F+IGA +A +AGV+   NYGT     GF+ G+KAF AAV
Sbjct: 181 AENPRVAALMGIKPDVVISATFIIGAMLAAIAGVMWASNYGTVQHAMGFMPGLKAFVAAV 240

Query: 244 LGGIGSLPGAMLGGLILGIAEA--------QFSGMVNSDYKDVFSFGLLVVILIFRPQGL 295
           +GGIG+L GA++GG+ LG+ E+           G++ S Y D+F+F +L ++L  RP GL
Sbjct: 241 MGGIGNLAGAVVGGIALGLIESLGAGYLGKLTGGVLGSQYTDIFAFIVLAIVLTLRPSGL 300

Query: 296 LGRPVVTK 303
           LG  V  +
Sbjct: 301 LGERVADR 308