Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  599 bits (1545), Expect = e-175
 Identities = 341/804 (42%), Positives = 469/804 (58%), Gaps = 96/804 (11%)

Query: 4   SDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFT 63
           S LL  LN +Q  AV  P  + L+LAGAGSGKTRVL  RIAWLL   + SP  I+AVTFT
Sbjct: 12  SPLLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFT 71

Query: 64  NKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLI 123
           NKAA EM  R+  ++  +  GMWIGTFHGL +R LRAHH  ANLP  FQILD+ DQ+  I
Sbjct: 72  NKAAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAI 131

Query: 124 KRLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEACDR 183
           KRL K  N+DD+++PP+Q  ++I+G K++G RP  V   +       L +Y  Y+E C R
Sbjct: 132 KRLCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARDEETRKK-LELYALYEEQCQR 190

Query: 184 AGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRL-------- 235
            G+VDF EL+LR++E+  +   + +HY+ RF ++++DEFQDTN +QYAWI++        
Sbjct: 191 EGVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEG 250

Query: 236 LAGDNNNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANS 295
           L    N V  VGDDDQSIY +RGA+V N+  F+++F     I+LEQNYRS S IL +AN 
Sbjct: 251 LTPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQ 310

Query: 296 LIENNNGRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYR 355
           LI +N  R+GKNL T+ G GEP+ ++ A ++  E++++V+ +K     G    + A+LYR
Sbjct: 311 LISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVLYR 370

Query: 356 SNAQSRVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPT 415
           SNAQSRV+E AL   A+PYR+YGG RFF+R EIK ALAYLRL+ N +DD +F RVVN P 
Sbjct: 371 SNAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPP 430

Query: 416 RGIGDRTLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDM 475
           RGIG R+++ ++  AR    ++  A  A      + GRA  ++  F   +D +  +T   
Sbjct: 431 RGIGARSIEQLQDVARTSGCSLHDAVSA------VTGRAGVAVGNFAAKIDVMREQTEGR 484

Query: 476 PLHVQTDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQF---------------- 519
            L    + V+  SGL   Y  E+  +GQ R+ENLEELV A   F                
Sbjct: 485 TLREIIELVLAHSGLIEHYRGER--EGQDRVENLEELVNAAESFVSIEGFGRDAVALPVD 542

Query: 520 ---------------------------SYQDEDEDLMPLQAFLSHAALEAGEGQADANQD 552
                                         +  E L PL AFL+HAALE+G+ QA A QD
Sbjct: 543 ELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQD 602

Query: 553 ATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAYVGVTRAMQKLTL 612
           A QLMT+H+AKGLEF  VFI GMEEG+FP + S+ +   LEEERRL YV +TRA ++L L
Sbjct: 603 AVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLYL 662

Query: 613 TYAETRRLYGKEVSHRPSRFVGELPEDCVEEVR-MRASVSRPMSN--------------- 656
           ++++TR L+G+   +  SRF  ELPE+C++ +   + + S PM                 
Sbjct: 663 SHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQPAWSAPMGGGGGQWQNGRRGFGGA 722

Query: 657 ------------RSVGTPTSVSDTG--------FKLGQRVVHPKFGEGTIVNMEGSGEHS 696
                       +  G P  +  T          + G  V H KFGEG ++ +EG+G+ +
Sbjct: 723 PAALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGDDA 782

Query: 697 RLQVAFPGEGIKWLVAAYARLEAV 720
           R QV F   G KWL  + A+L  +
Sbjct: 783 RAQVNFTRHGTKWLALSVAKLTPI 806