Pairwise Alignments

Query, 720 a.a., DNA helicase II from Rahnella sp. WP5

Subject, 752 a.a., Superfamily I DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  506 bits (1304), Expect = e-147
 Identities = 290/755 (38%), Positives = 437/755 (57%), Gaps = 44/755 (5%)

Query: 5   DLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFTN 64
           D L+ LN  QREAV      L+++AGAGSGKTRVL  RIA L+  +   P+ I+A+TFTN
Sbjct: 2   DYLEGLNPPQREAVEHTEGPLMIIAGAGSGKTRVLTFRIAHLIRAKNVDPFQILALTFTN 61

Query: 65  KAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLIK 124
           KAA+EMR+RI++LIG      W+GTFH +  ++LR        P +F I D+DD   LIK
Sbjct: 62  KAASEMRNRIERLIGLEARNTWMGTFHSIFAKILRVESEKLGFPSNFTIYDTDDSKSLIK 121

Query: 125 RLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNP---------VEATWLRIYQ 175
            ++K   +DDK + P   +  I+G K+  +  ++    N+P         ++     IY+
Sbjct: 122 SIVKEKRLDDKVYKPNTVLSRISGAKNRLISWENY--INDPYIKADDEAAMKPRMGEIYR 179

Query: 176 AYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRL 235
           AYQ+   ++  +DF +LL   + L+ + P +L  Y++RF  ++VDEFQDTN  QY   + 
Sbjct: 180 AYQKRLFKSSAMDFDDLLFNTNVLFRDHPDVLNKYQQRFRYVLVDEFQDTNLSQYLITKK 239

Query: 236 LAGDNNNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSTSTILKAANS 295
           LA  + N+ +VGDD QSIY +RGA ++NI  F KD+P+   ++LEQNYRST  I++AANS
Sbjct: 240 LAAVHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLHVVKLEQNYRSTKNIVEAANS 299

Query: 296 LIENNNGRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGGAL-KDCAILY 354
           +IE N  ++ KN+WT++G G+ I L  + ++ +E R V + I   ++N      D AILY
Sbjct: 300 IIEKNKAQLKKNVWTQNGNGDLIELIKSASDNEEGRMVASTIFEEKNNKKLQNSDFAILY 359

Query: 355 RSNAQSRVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTP 414
           R+N+QSR LEEAL +M + Y+I GG  F+ R+EIKD +AY R + N++D+ AF+R++N P
Sbjct: 360 RTNSQSRALEEALRKMNISYKIVGGLSFYQRKEIKDLMAYFRYVVNQDDEEAFKRIINYP 419

Query: 415 TRGIGDRTLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSD 474
            RGIG  +++ +   A +  + +WQ          L+GRA++S+  F  ++ +   E   
Sbjct: 420 KRGIGLSSVEKMMVAAYEHDIPLWQVVTN--SSSFLSGRASNSVSDFATMIKSFQMEVER 477

Query: 475 MPLHVQTDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAF 534
              +     + K SGL     ++K  +G  R EN++EL+ A +++    E+ED   L AF
Sbjct: 478 KDAYEAASTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNPENED-KNLGAF 536

Query: 535 LSHAALEAGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEE 594
           L   AL     +     DA  LMT+HS+KGLEF QVF+VG+EE +FPSQM ++    LEE
Sbjct: 537 LQEIALLTDNDRDKDEMDAVTLMTIHSSKGLEFRQVFVVGLEEDLFPSQMMMQSREDLEE 596

Query: 595 ERRLAYVGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRASVSR-- 652
           ERRL YV  TRAM+KL L+YA TR  +G+ ++  PSRF+ E+   C+   + R       
Sbjct: 597 ERRLFYVATTRAMEKLYLSYAITRYRFGRLLNCEPSRFLEEIDPSCIRVTKRRGQQPTGS 656

Query: 653 --PMSNRSVG--------TPTSVSDTGFKL-----------------GQRVVHPKFGEGT 685
               +N S G        TP+   +T  K+                 G +V HPKFG G 
Sbjct: 657 HFGRNNDSEGRSGFVGLKTPSVRKNTTAKVHTPSPDFKPSNTSNLAAGMKVEHPKFGFGK 716

Query: 686 IVNMEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV 720
           ++ +E  G + +  + F   G K L+ ++A+L  V
Sbjct: 717 VLKVEVEGLNKKATIGFDNFGEKTLLLSFAKLRIV 751