Pairwise Alignments

Query, 342 a.a., DNA-binding transcriptional regulator CytR from Rahnella sp. WP5

Subject, 330 a.a., DNA-binding transcriptional repressor of ribose metabolism (NCBI) from Escherichia coli BW25113

 Score =  207 bits (528), Expect = 2e-58
 Identities = 118/332 (35%), Positives = 197/332 (59%), Gaps = 9/332 (2%)

Query: 10  ATMKDVAEQAGVSTATVSRALMNPEKVSAATRQKVDQAVMAVGYSPHALARNLKRNESRT 69
           ATMKDVA  AGVST+TVS  +     VS A   KV+ A+  + Y+P ALAR+LK N++ T
Sbjct: 2   ATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHT 61

Query: 70  ILVIVPDICDPFFADLIQGIERTAAESGYLVLIGDCAQQNQQEKTFINLIITKQIDGMLL 129
           I +++    +PF+++L++G+ER+  E GY +++ +     Q+    +  ++ K++DG+LL
Sbjct: 62  IGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLL 121

Query: 130 LGSDLPFDASKEEQRNLP--PMVMANEFAPELELPTVHIDNLTAAFEAVHYLLKLGHQRI 187
           L ++     S+E  +  P  P VM +    + +   +  ++L     A  YL+  GH RI
Sbjct: 122 LCTET-HQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRI 180

Query: 188 ACIAGPKHMPLCQYRSQGYVQALRRNGLSVESKLTIHGDFSYESGAQAVTELMALPVPPT 247
           ACI GP      + R +GY  A++R GL++     + GDF +  G  A+ +L++ P+ P 
Sbjct: 181 ACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ 240

Query: 248 AIFCHNDVMAIG---AMFQAKKMGLRIPQDLSVVGFDDIKASQYTDPPLTTVAQPRFQLG 304
           A+F  ND MA+G   A++QA+   L++PQD++V+G+DDI+ + +  PPLTT+ QP+ +LG
Sbjct: 241 AVFTGNDAMAVGVYQALYQAE---LQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELG 297

Query: 305 RQAMLLLLEQLQGNPVQNGSLLLDSELVVRES 336
             A+ +L+ ++    +Q   L L   L+ R S
Sbjct: 298 ELAIDVLIHRITQPTLQQQRLQLTPILMERGS 329