Pairwise Alignments

Query, 731 a.a., primosomal protein N' from Rahnella sp. WP5

Subject, 840 a.a., primosomal protein N' from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  388 bits (997), Expect = e-112
 Identities = 220/625 (35%), Positives = 351/625 (56%), Gaps = 35/625 (5%)

Query: 129 DSLKRAPKQQQAMAALMQKPLYRHQVADLDLTDTALQALRAKGLTDLRSIAPAT------ 182
           D L +  KQ++ +   +Q      ++      +   + L  K +TD   ++P++      
Sbjct: 225 DQLSKNTKQEEILLKFLQ------EIPVFHAPERNEKGLEKKVITDA-GLSPSSLKTLIK 277

Query: 183 HDWRQDFSVIGER----------LRLNTEQATAVGAIRSEDQQFSAWLLAGVTGSGKTEV 232
           +D  ++F VI  R          ++L   Q   + +I+ +  Q    LL G+TGSGKTE+
Sbjct: 278 NDILEEFKVIVSRFENLPSDDREIKLADFQEEGLSSIKEQFDQKQTVLLHGITGSGKTEI 337

Query: 233 YLSVLENILAQGRQALVMVPEIGLTPQTIARFRERFSAPVDVLHSGLNDSERLAVWLRAR 292
           Y+ ++  +L  G Q L+++PEI LT Q ++R ++ F + + + HS  +D+ER+ VW    
Sbjct: 338 YIHLIREVLDSGSQVLLLLPEIALTTQIVSRLQKVFGSEMGIYHSKHSDNERVEVWQGVL 397

Query: 293 NGEAGIVIGTRSSLFTPFARLGVIIIDEEHDSSYKQQE-GWRYHARDLAVYRAHAENIPI 351
           +G    V+G RS++F PF  LG+II+DEEH+ SYKQ +   R+ ARD A+  +       
Sbjct: 398 SGRFSFVVGVRSAIFLPFDSLGMIIVDEEHEPSYKQFDPAPRFQARDAAIMLSWLHQSKT 457

Query: 352 IMGSATPALETLHNVELGKYRQLKLTKRAGNAKLARQN----LLDLKGLQLKVGLSQPLI 407
           ++GSATP+ E+ +N    KY  + L+KR G A+L   +    L+D K   LK+  ++ + 
Sbjct: 458 LLGSATPSYESFYNARTQKYGYVHLSKRFGEAQLPEFHVADILVDKKKNLLKLDFTRIMR 517

Query: 408 QKMQEHLKADNQVMLFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNQRQLRCHHCDS 467
           +K+QE L    Q+++F NRRGYAP + C ECGWI EC+ CD   T HQ   ++RCH+C  
Sbjct: 518 EKIQEALDRQEQILIFQNRRGYAPYMSCEECGWIPECEHCDVNLTYHQYSEEMRCHYCGF 577

Query: 468 QRAVPHQCPHCGSTQLVSVGVGTEQLENELAPLFPDTPITRIDRDTTSRKGSLEQHLNEV 527
           +  VP  CP CGS +L +VG+GTE+LE  L+ LFP+  + R+D DTT  K + ++  +E 
Sbjct: 578 KEKVPRACPACGSHKLTTVGIGTERLEESLSLLFPEARVGRMDLDTTRSKYAYQRIFDEF 637

Query: 528 HRGGARILIGTQMLAKGHHFPDVTLVSLLDVDGALFSADFRSAERFAQLYTQVSGRAGRA 587
             G   IL+GTQM+ KG  F  VT+V ++D D  L+  DFRS ER  Q  TQV+GRAGR 
Sbjct: 638 SSGNLDILVGTQMITKGLDFDRVTVVGIVDADRILYFPDFRSGERAFQQITQVAGRAGRR 697

Query: 588 GKQGEVVLQTHHPEHPLLQVLLQQGYDEFARQTLAERKSVFLPPYTSHIMIRSEDHDNQQ 647
            ++G VV+QT  P+H + + ++Q  + EF    +AERK  F PP+  ++ I S   + + 
Sbjct: 698 NRRGNVVIQTRRPDHEVFEKVIQGNFSEFYLTEMAERKRFFYPPFVKNVKITSRHKEAKV 757

Query: 648 SALFLQQLRNLLESSPLKDDSLWILGPVPALQAKRSGRFRWQLLLQ----HPSRRVLQHL 703
           +      L NLL+  P+K     ILGP  AL  K   ++ + + ++      +  + +H 
Sbjct: 758 AEKAAINLANLLKDIPVKK---IILGPERALIGKIKNQYLFDIYIKLDRAGNTPAIFKHE 814

Query: 704 IKSSQPLISSLPQAKKVKWTLDVDP 728
           +      +++    K V++ +DVDP
Sbjct: 815 MGKILFELNTQKAFKSVRFVVDVDP 839



 Score = 59.3 bits (142), Expect = 8e-13
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 4/111 (3%)

Query: 4   AHVALPVPLARTFDYLLPPDMQVSKGC--RVSVPFGKRDAI-GIVTQVSDFSEFGLEKLK 60
           A V LPVP+ R F Y +P  M+ S G   RV V FG++  + GI+ +V        E  K
Sbjct: 21  ADVILPVPIPRMFTYRIPRTMEKSIGIGHRVIVQFGRKKVLTGIIGKVHQKPPKDYET-K 79

Query: 61  PVREVLDSSSLFTPDLWRILFWAADYYHYPIGEVLFHALPVLLRQGKAAEL 111
            + EVLD   +  P   +  FW A+YY   IGEV+  ALP  L+    +++
Sbjct: 80  AILEVLDDQPVVNPLQIKFWFWMAEYYCCQIGEVMNAALPSGLKLSSESKI 130