Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score =  339 bits (870), Expect = 4e-98
 Identities = 170/294 (57%), Positives = 216/294 (73%), Gaps = 1/294 (0%)

Query: 25  DQSLTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERI 84
           D  L ++FLD LW+E+ L++NT  +YR DL    GWL   N +L++   E +   L+ R+
Sbjct: 5   DHPLIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLAWRL 64

Query: 85  EGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLA 144
           E  YK  S+AR LS +R  ++Y+ RE +   DPT  +  P+L + LPK LSEA V+ALLA
Sbjct: 65  EQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEADVEALLA 124

Query: 145 SPSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGE 204
           +P +   +  RD+AMLE+LYA GLRV+EL+ LTL  ++LRQGV+RV+GKG+KERLVPMGE
Sbjct: 125 APDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGE 184

Query: 205 EAVYWIENYFEHGRPWLLNGQSLDIVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSP 264
           EA+ W+E Y    R  LL G+  D++FPS R +QMTRQTFWHRIKH A +AGI  + LSP
Sbjct: 185 EAIVWVERYMRDARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI-GKALSP 243

Query: 265 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 318
           H LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA  RL+ +H +HHPR
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297