Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score =  347 bits (891), Expect = e-100
 Identities = 177/294 (60%), Positives = 218/294 (74%), Gaps = 1/294 (0%)

Query: 25  DQSLTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERI 84
           D  L +QFLD LW+E+ L++NT  SYR DL    GWL  ++  L     + +   L+ R+
Sbjct: 5   DHPLIDQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRL 64

Query: 85  EGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLA 144
           + GYK  S+AR LS +R  F+Y+ RE +   DPT  +  P+L + LPK LSEA V+ALL 
Sbjct: 65  DQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQ 124

Query: 145 SPSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGE 204
           +P +   +  RD+AMLE+LYA GLRV+ELV LTL  ++LRQGV+RV+GKG+KERLVPMGE
Sbjct: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGE 184

Query: 205 EAVYWIENYFEHGRPWLLNGQSLDIVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSP 264
           EAV W+E Y   GR  LLNG+  D++FPS R +QMTRQTFWHRIKH+A +AGID + LSP
Sbjct: 185 EAVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGID-KPLSP 243

Query: 265 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 318
           H LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA  RL+ LH QHHPR
Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297