Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 306 a.a., Tyrosine recombinase XerD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  282 bits (722), Expect = 6e-81
 Identities = 153/303 (50%), Positives = 198/303 (65%), Gaps = 6/303 (1%)

Query: 20  AVNEADQSLTEQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLF 79
           A+  A + +   F+D LW+E  L+ NTL +YR+DL  L  WL  +   L   S  DL  +
Sbjct: 5   ALASASEGIAGAFIDSLWLEEGLSRNTLDAYRRDLVLLGQWLAGHGKTLPETSEADLNQY 64

Query: 80  LSERIEGGYKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQV 139
            S+R     +AT++ R L+  +R F++  RE V Q DPT  L   + P R+PK +SEAQV
Sbjct: 65  FSDR-HAETRATTANRRLTVFKRYFRWALRERVIQVDPTLRLVPARQPLRVPKTMSEAQV 123

Query: 140 DALLASPSVDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERL 199
           +ALL +P V  PL LRD+ MLEL+YA+GLRVSELV L    + + + V+R+ GKGNKERL
Sbjct: 124 EALLNAPDVGTPLGLRDRCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITGKGNKERL 183

Query: 200 VPMGEEAVYWIENYFEHGRPWLLNGQSLDIVFPSNR----AQQMTRQTFWHRIKHYAILA 255
           VP G+ A  W++ Y    R  +LNGQ  + +F ++R     + MTR  FW  +K YA  A
Sbjct: 184 VPFGQLAGQWLQRYLGQARVEILNGQQSEDLFVTSRGARAGEAMTRAMFWQLVKKYAAQA 243

Query: 256 GIDAERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQH 315
           GI +  LSPH LRHAFATHLLNHGADLR VQMLLGH+D+STT IYTHVA ERLK +  QH
Sbjct: 244 GITSP-LSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIVAQH 302

Query: 316 HPR 318
           HPR
Sbjct: 303 HPR 305