Pairwise Alignments

Query, 319 a.a., site-specific tyrosine recombinase XerD from Rahnella sp. WP5

Subject, 301 a.a., tyrosine recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  194 bits (494), Expect = 2e-54
 Identities = 114/296 (38%), Positives = 182/296 (61%), Gaps = 12/296 (4%)

Query: 30  EQFLDMLWIERNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAE--DLQLFLSERIEGG 87
           +QF   L IER+L++N++S+YR+D++ L  ++      +  ++ +   L+ F+SE    G
Sbjct: 10  KQFEYYLKIERSLSKNSISAYRRDMEKLSAFMKDAFPGITPLTTQLNHLRAFVSELASLG 69

Query: 88  YKATSSARLLSAMRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPS 147
               + AR++S ++  F++M  E   ++DP  LL +PKL ++LP  LS  ++  LL    
Sbjct: 70  ISEYTQARVISGVKAFFKFMVYEDKLEEDPAILLEAPKLGRKLPDTLSYEEIVKLLEGIK 129

Query: 148 VDVPLELRDKAMLELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAV 207
           +  P   R++AMLE+LY++GLRVSELV L L  +    G +R++GKGNKERLVP+G++A+
Sbjct: 130 LGTPEGHRNRAMLEVLYSSGLRVSELVELKLGMVYSDIGFLRILGKGNKERLVPVGKDAL 189

Query: 208 YWIENYFEHGRPWLLNGQSL-----DIVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERL 262
            +++ Y +  R    N Q +     + VF + R ++MTR   +  IK      GI  +++
Sbjct: 190 RYLKLYLDEVR----NHQKIAPGHEEYVFLNRRGKKMTRVMVFIFIKKLVEEVGI-KKKV 244

Query: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 318
           SPH  RH+FATHL+  GADLR VQ +LGH  ++TT+IYTH+  E L+ +    HPR
Sbjct: 245 SPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLRQVLTDFHPR 300