Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

 Score =  633 bits (1633), Expect = 0.0
 Identities = 318/557 (57%), Positives = 412/557 (73%), Gaps = 4/557 (0%)

Query: 21  ELSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTAVALLQKALAERLRIIIVGDF 80
           EL PLL RLY ARGV    EL++ +  ++PYQQL GID AV LL  AL +R RI+IVGDF
Sbjct: 17  ELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDF 76

Query: 81  DADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVDNGI 140
           DADGAT++ +  L LR +G  ++DYLVPNRFE GYGL+PE+V  A  R  +L++TVDNGI
Sbjct: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLLITVDNGI 136

Query: 141 SSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFYLML 200
           SS  GV  A   G+QVL+TDHHLPG+ LP A+AI+NPN  GCEFPSK+LAGVGV FY+++
Sbjct: 137 SSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196

Query: 201 ALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRAGKC 260
           ALR+ LR  GW++      PN+ E LDLVALG+VADVVPLD NNRI+V+QGL RIRAG+ 
Sbjct: 197 ALRARLRSLGWYDNTPQ--PNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRA 254

Query: 261 RAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARALAS 320
           R GI+A+LEVA R+A  + ++DLGF LGPRLNAAGRLDDMS+G+  LL+ D   AR +A+
Sbjct: 255 RPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDFAAAREMAA 314

Query: 321 DLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRLKER 380
            LD +NQ R+ IEQGMQ EALA    L    +++P+GL ++ PEWHQGV+GILASR+KER
Sbjct: 315 QLDGMNQDRKSIEQGMQREALAQLKDLP--VESMPYGLCLFDPEWHQGVIGILASRMKER 372

Query: 381 FNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSLEES 440
           + RP IAFA AG+G+LKGSGRS+ G H+RDAL  + + +P L+ K+GGHAMAAGL+L E 
Sbjct: 373 YFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGLTLPEE 432

Query: 441 KFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAFPEPTF 500
            F  F + F A V   L    L G + SDG L+  E  ++ A  LR  GPWGQ FPEP F
Sbjct: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492

Query: 501 DGRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPDSSIREVQLAYRLDINE 560
            G F++++Q+++ ERHLK++++   G   LDGIAF +D   WP+ ++R V+LAY+LD+NE
Sbjct: 493 HGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNE 552

Query: 561 FRGNRSVQLIIEHLWPK 577
           FRGN +VQL+I H+ P+
Sbjct: 553 FRGNETVQLMIAHIEPR 569