Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  628 bits (1619), Expect = 0.0
 Identities = 320/556 (57%), Positives = 411/556 (73%), Gaps = 4/556 (0%)

Query: 22  LSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTAVALLQKALAERLRIIIVGDFD 81
           L PLL RLY ARGV    EL++ +  +LPYQQL GI+  V LL +A+ +R RI+IVGDFD
Sbjct: 18  LPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLLVEAIDQRQRILIVGDFD 77

Query: 82  ADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPEVVEQAASRGAELILTVDNGIS 141
           ADGAT++ + +L LR +G  ++DYLVPNRFE GYGL+PE+VE A  R  +L++TVDNGIS
Sbjct: 78  ADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEVALQRQPQLLITVDNGIS 137

Query: 142 SHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLVGCEFPSKSLAGVGVAFYLMLA 201
           S  GV  A   G++VL+TDHHLPGE LPDA+AIINPN  GC FPSKSLAGVGV FY+++A
Sbjct: 138 SVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSFPSKSLAGVGVIFYVLMA 197

Query: 202 LRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPLDTNNRIMVYQGLNRIRAGKCR 261
           LR+ LR  G +E      PN+ E LDLVALG+VADVVPLD NNRI+V+QGL RIRAG+ R
Sbjct: 198 LRARLRSLGRYEAQPQ--PNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRAR 255

Query: 262 AGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDMSVGVALLLSEDIGQARALASD 321
            G++A+LEVA R+ R + ++DLGF LGPRLNAAGRLDDMS+G+  LL ED   A+ +A  
Sbjct: 256 PGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIECLLCEDAALAQDMAQQ 315

Query: 322 LDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAMYHPEWHQGVVGILASRLKERF 381
           LD LNQ R+ IEQGMQ EALA    L    +++P+GL ++  +WHQGV+GILASRLKER+
Sbjct: 316 LDDLNQDRKSIEQGMQREALAQLKDLP--VESMPYGLCLFDADWHQGVIGILASRLKERY 373

Query: 382 NRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNPGLMMKFGGHAMAAGLSLEESK 441
           +RP IAFA AG+G+LKGS RS+ G H+RDAL+ +   +P L+ KFGGHAMAAGLSL E+ 
Sbjct: 374 HRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLISKFGGHAMAAGLSLPEAN 433

Query: 442 FDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTIDTAEMLRDGGPWGQAFPEPTFD 501
           F  F + F   V   L    L G + SDG L+  E  +D A+ LR  GPWGQ FPEP F 
Sbjct: 434 FSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHAGPWGQHFPEPLFH 493

Query: 502 GRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPTFWPDSSIREVQLAYRLDINEF 561
           G F++++Q+++ ERHLK++++   G   LDGIAF ID   WP+ ++R V+LAY+LD+NEF
Sbjct: 494 GVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVRWVELAYKLDVNEF 553

Query: 562 RGNRSVQLIIEHLWPK 577
           RGN SVQL+I H+ P+
Sbjct: 554 RGNESVQLMIAHMEPR 569