Pairwise Alignments

Query, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Rahnella sp. WP5

Subject, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

 Score =  874 bits (2259), Expect = 0.0
 Identities = 429/576 (74%), Positives = 496/576 (86%)

Query: 1   MTLQTQLRRREAATGVDLPAELSPLLRRLYLARGVTQSHELERGVRGMLPYQQLDGIDTA 60
           M  Q QLRRRE     DLPAEL PLLRRLY +RGV  + ELER V+GMLP+QQL G++ A
Sbjct: 1   MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKA 60

Query: 61  VALLQKALAERLRIIIVGDFDADGATSTALTLLSLRSMGCGNLDYLVPNRFEDGYGLSPE 120
           V +L  A  E  RII+VGDFDADGATSTAL++L++RS+GC N+DYLVPNRFEDGYGLSPE
Sbjct: 61  VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE 120

Query: 121 VVEQAASRGAELILTVDNGISSHAGVTLAHEKGIQVLITDHHLPGEILPDAEAIINPNLV 180
           VV+QA +RGA+LI+TVDNGISSHAGV  A   GI V++TDHHLPG+ LP AEAIINPNL 
Sbjct: 121 VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR 180

Query: 181 GCEFPSKSLAGVGVAFYLMLALRSALRESGWFEQNGLAIPNLAEHLDLVALGTVADVVPL 240
            C FPSKSLAGVGVAFYLMLALR+ LR+ GWF++  +AIPNLAE LDLVALGTVADVVPL
Sbjct: 181 DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPL 240

Query: 241 DTNNRIMVYQGLNRIRAGKCRAGIRALLEVAGREARTLCASDLGFALGPRLNAAGRLDDM 300
           D NNRI+ +QG++RIRAGKCR GI+ALLEVA R+A+ L ASDLGFALGPRLNAAGRLDDM
Sbjct: 241 DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM 300

Query: 301 SVGVALLLSEDIGQARALASDLDALNQTRREIEQGMQVEALALCDKLESSTDALPFGLAM 360
           SVGVALLL ++IG+AR LA++LDALNQTR+EIEQGMQ+EAL LC+KLE S D LP GLAM
Sbjct: 301 SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM 360

Query: 361 YHPEWHQGVVGILASRLKERFNRPVIAFAPAGEGILKGSGRSIAGLHMRDALERLDTLNP 420
           YHPEWHQGVVGILASR+KERF+RPVIAFAPAG+G LKGSGRSI GLHMRDALERLDTL P
Sbjct: 361 YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP 420

Query: 421 GLMMKFGGHAMAAGLSLEESKFDEFRDRFAALVGEWLDPSHLEGVVWSDGELSARELTID 480
           G+M+KFGGHAMAAGLSLEE KF  F+ RF  LV EWLDPS L+G V SDG LS  E+T++
Sbjct: 421 GMMLKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME 480

Query: 481 TAEMLRDGGPWGQAFPEPTFDGRFRILQQKLLKERHLKLMIEPVGGGPLLDGIAFNIDPT 540
            A++LRD GPWGQ FPEP FDG FR+LQQ+L+ ERHLK+M+EPVGGGPLLDGIAFN+D  
Sbjct: 481 VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA 540

Query: 541 FWPDSSIREVQLAYRLDINEFRGNRSVQLIIEHLWP 576
            WPD+ +REVQLAY+LDINEFRGNRS+Q+II+++WP
Sbjct: 541 LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWP 576