Pairwise Alignments

Query, 510 a.a., PTS transporter subunit EIIC from Rahnella sp. WP5

Subject, 480 a.a., trehalose PTS system, EII-BC components TreB (from data) from Pseudomonas simiae WCS417

 Score =  170 bits (430), Expect = 1e-46
 Identities = 133/502 (26%), Positives = 219/502 (43%), Gaps = 57/502 (11%)

Query: 1   MAINYAQTAQDIVKYIGGDNNVISITHCATRLRFVLKDNKAVDKEELKRVKGVITVIEAG 60
           M+ +Y+  A++I++ +GG +N+    HC TRLR  LKD   V+   L +V  V      G
Sbjct: 1   MSHDYSTIAREILENLGGSDNLEQAAHCVTRLRLALKDPSLVNSSALNQVDLVKGSFFTG 60

Query: 61  GQMQVVIG-NHVSDAYNQV-----LKLIQIDENAPVSAPNVGIVSRVMDVISSIFTPFLY 114
           G  QVVIG   V   Y  +     L    I +     A     + R++ V S +F P L 
Sbjct: 61  GLFQVVIGPGEVEKVYAALREQTGLAAATIADVKKKGADKTNAMQRLVRVFSDVFMPILP 120

Query: 115 QLAACGILQGIISFLAAIGIMDASS----------GTYRILNFVSWTAFTFLPVMIAFTA 164
            L   G+L G+ + + A G+               G + ++N ++ T+F FLP ++ ++A
Sbjct: 121 ALIIAGLLMGVNNLMGAQGMFIEGKTLLEAYPNLDGLWSLINLMANTSFVFLPALVGWSA 180

Query: 165 AKKFNVNPFTAVITACALISPDYMNMLTAFKITSINSADPAMQQLMREAVSNPDIANILQ 224
           AK+F  +    ++    L+ PD +N     K                 AV+  D      
Sbjct: 181 AKRFGGSEILGIVLGLMLVHPDLLNAWNYGK-----------------AVAGLD------ 217

Query: 225 NVVGIPVSAPTLDFLG-IPVKYLSYTASVIPIILMVWAMSYIEHFFNKVLPVVIRNLFTP 283
                  S P  D  G   ++ + Y   ++PI++  + MS IE      +P  I+ L  P
Sbjct: 218 -----GQSLPYFDIFGWFKIEKVGYQGQILPILMAAYVMSVIEKGLRARVPNAIQLLVVP 272

Query: 284 MFCIAIMVPMTLLVFGPVGNLIGGAIGGVYNYLYHLSPTIAGFVVGAFWQPLVTLGVHWG 343
           +  I +   + L + GPV   +G  I      L+ L+P + G + G  + PLV  G+H  
Sbjct: 273 ITTIVVTGVLALAIIGPVTRHLGILITEGVVTLFDLAPMVGGAIFGLLYAPLVITGMHHM 332

Query: 344 ITPVTVGNYATLGYDTFTGLQASAVFAMTGSMFGVYLKTRSREMKGISLSAGVTGLFGIT 403
              V +   +T G      +   +  A   +   V+  TR+   K ++ ++ ++  FGIT
Sbjct: 333 FLAVDLQLISTQGGTFIWPMIVMSNLAQGSAALAVFYTTRNARDKSMASTSAISAYFGIT 392

Query: 404 EPAIYGVALRLKKPFLCSCVAGGIGGAIAGSFNAVSWSYCLPGIAVLPVFFKEGHMPQFL 463
           EPA++GV LR K PF  + V   + G+I  + N V  S     I V       G +P F+
Sbjct: 393 EPAMFGVNLRFKFPFYAALVGSAL-GSIFLALNKVQAS----AIGV-------GGLPGFI 440

Query: 464 GFLLSISVAFVLGALFTWLVGF 485
             +      FV+G +   +V F
Sbjct: 441 SIVPQSIAVFVIGMVIAMVVPF 462