Pairwise Alignments

Query, 281 a.a., carbohydrate ABC transporter permease from Rahnella sp. WP5

Subject, 280 a.a., Inner membrane ABC transporter permease protein YcjP from Escherichia coli ECRC100

 Score =  462 bits (1188), Expect = e-135
 Identities = 228/279 (81%), Positives = 252/279 (90%)

Query: 3   ATNRKILRKAGFYASLLIFLGAMLFPFFIMLMTSFKSSKEAISRHPTLFPQEWDFHHYVD 62
           ATN++ L + GFY  L +FL   LFPFF+MLMTSFKS+KEAIS HPTL PQ+W   HYVD
Sbjct: 2   ATNKRTLSRIGFYRGLALFLIITLFPFFVMLMTSFKSAKEAISLHPTLLPQQWTLEHYVD 61

Query: 63  IFNPQIFPFLSYFKNSLTVSVLASVIAVFFGILGAYALSRLRFKGRVTINASFYTVYMFS 122
           IFNP IFPF+ YF+NS+ VSV++SV+AVF GILGAYALSRLRFKGR+TINASFYTVYMFS
Sbjct: 62  IFNPVIFPFVDYFRNSMVVSVVSSVVAVFLGILGAYALSRLRFKGRMTINASFYTVYMFS 121

Query: 123 GILLVVPLFKIISALGLYDTTTALVITMVVQTLPTAVFMLKSYFDTIPHDIEEAAMMDGL 182
           GILLVVPLFKII+ALG+YDT  AL+ITMV QTLPTAVFMLKSYFDTIP +IEEAAMMDGL
Sbjct: 122 GILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFMLKSYFDTIPDEIEEAAMMDGL 181

Query: 183 NRLQIIFYITVPLAISGIISVFVYCFMVAWNDYLFASIFLSSSANFTLPVGLNTLFSTPD 242
           NRLQIIF ITVPLA+SG+ISVFVYCFMVAWNDYLFASIFLSS++NFTLPVGLN LFSTPD
Sbjct: 182 NRLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFASIFLSSASNFTLPVGLNALFSTPD 241

Query: 243 YVWGRMMAASLVTALPVVLMYALSERFIKGNLTDGGVKG 281
           Y+WGRMMAASLVTALPVV+MYALSERFIK  LT GGVKG
Sbjct: 242 YIWGRMMAASLVTALPVVIMYALSERFIKSGLTAGGVKG 280