Pairwise Alignments

Query, 526 a.a., ABC transporter substrate-binding protein from Rahnella sp. WP5

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  175 bits (443), Expect = 4e-48
 Identities = 151/526 (28%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 23  LALSGLSFATQAAVPKDMLVIGKAADPQTLD-----PAVTIDNNDWTVTYPAYQRLVQYK 77
           LAL  L       +    LV+   A P+  D      AVT D +  TV    + RLV +K
Sbjct: 21  LALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETV----FNRLVDFK 76

Query: 78  TEDGKGSTQVEGDLAASWTASPDQLVWTFKLKPGAKFDDGS------DVNADAVKWSFER 131
                G+T+++  LA  W  S D L +TF L+ G KF          D+NAD V WS  R
Sbjct: 77  P----GTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNR 132

Query: 132 LMKIGQG----PSEAFP-------KDM--TVTVVDPMTVTFTLKTPFAPFLYTLANDGAG 178
            +          S  +P       K++  +V+  D  TV  TL  P APFL  +A     
Sbjct: 133 QLDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTS 192

Query: 179 IVNPAIAKANPADEGKAWLAGHTAGSGPYKLDRWQKGQQLVLVPNPHYSGTKPAFKRVTV 238
           I +             A L     G+GP+   R+ K  Q+   PNP Y   KP    +  
Sbjct: 193 IYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVF 252

Query: 239 KIIGESATRRLQLSRGDLDIADSLPMDQLAALKKENKVAVEEFPSLRVTYLYLNNGKTPL 298
            I  +S  R  +L   +  +A     D + ++K++ K+ VEE  +L   Y+ +N     L
Sbjct: 253 AIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYL 312

Query: 299 NQVDLRRAISSAVDYQGMVKGILG-GNAKQMRGPIPDGMWGFDPTAKQYTLDLTQAKADL 357
           N V +R+AI+ A D Q  V  + G GNA     P P  M G++   +    DL +A+A L
Sbjct: 313 NDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALL 372

Query: 358 EKVKDKPQTLDFLYSDN-----DPNWESIALSVQASLGQAGINVKLEKLANATMRDRIGQ 412
            +      T+  L++ N     +PN    A  +QA L Q G+ + +  +  A M  R   
Sbjct: 373 SQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKN 432

Query: 413 GDYDISIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYSNPDVDALLKKAVSVTDQKQR 472
           G+ D+    W+ D  DP  F++     D      N + + NP    L+ +A  V D  +R
Sbjct: 433 GEADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDER 492

Query: 473 TDYYQQAQKIVIDEAAYVYLFQKNYQVAMNKDVKGFVFNPMLEQVF 518
              Y +A K+  DE  ++ +       AM  +V+G+V NP+    F
Sbjct: 493 ARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNF 538