Pairwise Alignments

Query, 279 a.a., diaminopimelate epimerase from Rahnella sp. WP5

Subject, 267 a.a., diaminopimelate epimerase from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 2e-33
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 15/266 (5%)

Query: 3   FHRYHGLGNDYLVCHHR-VAALLSNQQIRRICDRHYGIGSDGL--LIDNDDADIPSLRII 59
           F + H  G+D+++   R +   ++ +  R++ +RH GIG + L  L+D DDA    ++  
Sbjct: 5   FVKMHAHGDDFIIIDRRGLHDPITAKVARQLGNRHTGIGFNQLAVLLDCDDA-AARIKFW 63

Query: 60  NPDGSEAEKSGNGLRIYA-RYLFDIGRVAHEPFLVNTPGGQVRCEVTDGAHQVIVDMGQA 118
           NP+G+     G+  R  A R + + G    +  ++ T  G + C    G  Q+ V+MG+ 
Sbjct: 64  NPNGTLLATCGSATRGVADRLMHEAGT---DSVVLRTDRGLLTCARAAG-RQISVNMGEP 119

Query: 119 KFSPAALPASVEGDEALALPIVAGGHNLSATLVSMGNPHCVIRVDKLDLDLVKQLGSEIE 178
               +A+P + E  + L LPI       +    SMGNPHC   V+ L    V  +G  +E
Sbjct: 120 SLDWSAVPLA-EAMDTLTLPIDG-----NPAACSMGNPHCTFFVEDLTAVDVATVGPALE 173

Query: 179 TLAIFPKRTNVQFAQVLDRKNISIGIWERGAGYTLASGSSSCAAASAMRKLGLVDDHVTV 238
              +FP +TNV F QVLDR +I + IWERG G  L SGS  C A     + GL+D  V V
Sbjct: 174 IHPLFPAKTNVHFVQVLDRGHIRLRIWERGGGVPLGSGSCCCGAVVNGIRRGLLDATVQV 233

Query: 239 HMPGGKLAISFSGDFQVNMRGPVQKI 264
           H  GG + + ++G+  V + G V+ +
Sbjct: 234 HCDGGTVTVHWAGEGAVVLTGSVEPV 259