Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  561 bits (1446), Expect = e-165
 Identities = 275/333 (82%), Positives = 301/333 (90%)

Query: 6   MKILLIASAVSLACLSAQAAERIAFIPKLVGVGYFTSGGNGAMAAGKALGADVTYDGPTE 65
           M  LL A  ++ A ++ QAAERIAFIPKLVGVG+FTSGGNGA  AGKALG DVTYDGPTE
Sbjct: 15  MIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTE 74

Query: 66  PSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIY 125
           PSVSGQVQ++NNFVNQGY+AI+V+AVSPDGLCPALKRAMQRGVK+LTWDSDTKPECRS Y
Sbjct: 75  PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYY 134

Query: 126 INQGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEI 185
           INQGTP+QLGSMLVEM + QV KEKAKVAFFYSSPTVTDQNQWVKEAKAKI++EHPGWEI
Sbjct: 135 INQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEI 194

Query: 186 VTTQYGYNDATKSLQTAEGILKSYGDLDAIIAPDANALPAAAQAAENLKRTNVTIVGFST 245
           VTTQ+GYNDATKSLQTAEGI+K+Y DLDAIIAPDANALPAAAQAAENLKR N+ IVGFST
Sbjct: 195 VTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFST 254

Query: 246 PNVMRPYVERGTVKQFGLWDVVSQGKISVYVADQLLKKGALNVGDKLDVPDVGTVEVVPN 305
           PNVMRPYV+RGTVK+FGLWDVV QGKISVYVA+ LLK   +NVGD LD+P +G V V PN
Sbjct: 255 PNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPN 314

Query: 306 SVQGYQYEAKGNGIVLLPERVVFTKDNIGKYDF 338
           S QGY YEAKGNGIVLLPERV+F KDNI KYDF
Sbjct: 315 SEQGYHYEAKGNGIVLLPERVIFNKDNIDKYDF 347