Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 328 a.a., LacI family transcriptional regulator from Escherichia coli ECRC101

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 4   NTMKILLIASAVSLACLSAQAAERIAF-IPKLVGVGYFTSGGNGAMAAGKALGADVTYDG 62
           N +  LL+ +A+  A L  QAAE++   I K+ G+ +F   G G + AGKA G + +  G
Sbjct: 9   NMVSSLLLGAALISAPL--QAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVG 66

Query: 63  PTEPSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECR 122
           P+      QV++I + + +  NAI +     + L P  K+A   G+ VLT +S  +P   
Sbjct: 67  PSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSAN 126

Query: 123 -SIYINQGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEH- 180
             I I     ++  +  VE  + ++   K     +  S TV   N W  +   K  KEH 
Sbjct: 127 WDIEIIDN--EKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWA-DLLVKYQKEHY 182

Query: 181 PGWEIVTTQYGYNDATK-SLQTAEGILKSYGDLDAIIAPDANALPAAAQAAENLKRTN-V 238
           P    VT +    ++   S +T   ++K+Y DL A+++  +N    A +A +  +  N V
Sbjct: 183 PDMHEVTRRMPVAESVDVSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKV 242

Query: 239 TIVGFSTPNVMRPYVERGTVKQFGLWDVVSQGKISVYVADQLLKKGALNVGDKLDVPDVG 298
            + G   P+     ++ G + +   +D  S G     VA  LLK   +  G  L++ ++G
Sbjct: 243 AVYGMMIPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPG--LEMQNLG 300

Query: 299 TVEV 302
             +V
Sbjct: 301 KADV 304