Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  184 bits (466), Expect = 4e-51
 Identities = 107/318 (33%), Positives = 186/318 (58%), Gaps = 11/318 (3%)

Query: 8   ILLIASAVSLACLS--AQAAE-RIAFIPKLVGVGYFTSGGNGAMAAGKALGA-DVTYDGP 63
           +L +++A+S+A L   A+AA+ +IA + K +G G+F +   GA  A K LG  ++ Y GP
Sbjct: 11  VLALSAALSVAGLGSIAEAADVKIALVVKSLGNGFFEAANKGAQEAAKDLGGVEIIYTGP 70

Query: 64  TEPSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRS 123
           T  +  GQ+++IN+ + QG +AI ++A  PD + PALK+A QRG+KV++WDS   PE R 
Sbjct: 71  TSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPEGRI 130

Query: 124 IYINQGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGW 183
           + +N  +   +G M +++ ++ ++  K   A   ++ T T+QN W+ E K ++ K+ PG 
Sbjct: 131 LQLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWIGEMKKQL-KDFPGL 189

Query: 184 EIVTTQYGYNDATKSLQTAEGILKSYGDLDAIIAPDANALPAAAQAAENL-KRTNVTIVG 242
            +VTT YG + A KS + A+G+L S  ++  I+AP    + AA+QA ++  K   V + G
Sbjct: 190 NLVTTVYGDDLADKSYREAQGLLSSQPNVKVIVAPTTVGVLAASQAVKDAGKIGQVFVTG 249

Query: 243 FSTPNVMRPYVERGTVKQFGLWDVVSQGKISVYVADQLLKKGA-LNVGDKLDVPDVGTVE 301
              P+ M   ++ G  K+F +W+ +  G  +  +A +L+K  A    G +++   +G ++
Sbjct: 250 LGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADGKPGSEIEAGRMGKIK 309

Query: 302 VVPNS----VQGYQYEAK 315
           V  NS       + Y+AK
Sbjct: 310 VGENSEAAMADPFIYDAK 327