Pairwise Alignments

Query, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

Subject, 313 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 12/304 (3%)

Query: 10  LIASAVSLACLSAQAAERIAFIPKLVGVGYFTSGGNGAMAAGK-ALGADVTYDGPT-EPS 67
           L+ SA++L  +S   A  IA I K V   ++ +   GA AA K + G  +T+ GP  E +
Sbjct: 8   LLTSAIALWSVSTVQAGEIAVIVKTVNSTFWQNVQKGADAAMKNSSGNTMTFQGPAAESA 67

Query: 68  VSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSIYIN 127
           ++ QV M+ N +N+    IV+A   PD L PA+K+A +  + V+  DS         Y +
Sbjct: 68  IADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARIPVVLIDSQLAKGSEQYYQS 127

Query: 128 --QGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEI 185
                 ++ G +  +    +V  E       Y +   ++  +          + H   +I
Sbjct: 128 FLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIGR--VGGFTDYIQMHSKLQI 185

Query: 186 VTTQYGYNDATKSLQTAEGILKSYGDLDAII-APDANALPAAAQAAENLKRTNVTIVGFS 244
           V   Y  +    +L     +L +  DL  I  A +  A+      A++ K   V  +GF 
Sbjct: 186 VGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGVGRALAQSGKAGKVIAMGFD 245

Query: 245 TPNVMRPYVERGTVKQFGLWDVVSQGKISVYVADQLLKKGALNVGDKLDVPDVGTVEVVP 304
               ++ +V+ GT+    +      G+  V    +L+ K  +         D G V V  
Sbjct: 246 GNQDLQSFVKDGTLAGIVVQGSYQMGEKGVETVTKLINKEKVE-----KFVDTGVVVVTK 300

Query: 305 NSVQ 308
           ++++
Sbjct: 301 DNIE 304