Pairwise Alignments

Query, 501 a.a., xylose ABC transporter ATP-binding protein from Rahnella sp. WP5

Subject, 501 a.a., fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  417 bits (1073), Expect = e-121
 Identities = 223/497 (44%), Positives = 328/497 (65%), Gaps = 13/497 (2%)

Query: 1   MRNITKRFGAVKAVDNISLTLSAGEVLSLCGENGSGKSTLMKVLCGIYPQGTFEGEIYFS 60
           ++ I K F  VKA+   +L +  G V++L GENG+GKST+MKVL GIY +    G + + 
Sbjct: 7   LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA--GTLLWL 64

Query: 61  GERLTAKGIRDTEQKGIAIIHQELALVKQLSVLENMFLGNEW-GSYGLLDTDKMYLRCQR 119
           G+  T  G + +++ GI IIHQEL L+ QL++ EN+FLG E+   +G +D   MY    +
Sbjct: 65  GKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEADK 124

Query: 120 MLAQVKLNIDPHTLVGELGLGQRQLVEIAKALNKQVRLLVLDEPTASLTESETAILLDII 179
           +LA++ L      LVG+L +G +Q+VEIAK L+ + +++++DEPT +LT++ET  L  +I
Sbjct: 125 LLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184

Query: 180 RDLRHHDIACIYISHKLNEVKAISDKLCVIRDGRHIATCNAAGTSEKEIIAMMVGRELTE 239
           R+L+      +YISH++ E+  I D + V RDG+ IA    A  +E  +I MMVGR+L +
Sbjct: 185 RELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRKLED 244

Query: 240 LFPPRERQIGKEILRVENLTAWHPVNRHIKRVDNAGFTLREGEVLGVAGLVGAGRTEMME 299
            +P  ++  G   L+V+NL            V++  FTLR+GE+LGV+GL+GAGRTE+M+
Sbjct: 245 QYPHLDKAPGDIRLKVDNLCG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMK 296

Query: 300 CLFGVYPGRWSGDIWLQGEKVQITGCRDAMRRGLAMVPEDRKRDGIVPVMAVGSNITLAA 359
            L+G  P R SG + L G +V     +D +  G+  + EDRKRDG+V  M+V  N++L A
Sbjct: 297 VLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTA 355

Query: 360 LSQFS-AGGVLREAEEQHSISESVKQLKIKTSSPELAIGRLSGGNQQKAILARCLLLKPK 418
           L  FS AGG L+ A+EQ ++S+ ++   +KT S E AIG LSGGNQQK  +AR L+ +PK
Sbjct: 356 LRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK 415

Query: 419 ILILDEPTRGIDVGAKHEIYKLIGQLAAQGMAIIVISSELPEVLGLSDRVVVMHLGQVKA 478
           +LILDEPTRG+DVGAK EIY+LI Q  A G++II++SSE+PEVLG+SDR++VMH G +  
Sbjct: 416 VLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSG 475

Query: 479 CLDNNNLSQEQVMEAAL 495
                  +QE +M AA+
Sbjct: 476 EFTREQATQEVLMAAAV 492



 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 13/231 (5%)

Query: 14  VDNISLTLSAGEVLSLCGENGSGKSTLMKVLCGIYPQGTFEGEIYFSGERLTAKGIRDTE 73
           V+++S TL  GE+L + G  G+G++ LMKVL G  P+ +  G +   G  +  +  +D  
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS--GYVTLDGHEVVTRSPQDGL 325

Query: 74  QKGIAIIHQEL---ALVKQLSVLENM------FLGNEWGSYGLLDTDKMYLRCQRMLAQV 124
             GI  I ++     LV  +SV ENM      +     GS    D  +      R+    
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVK 385

Query: 125 KLNIDPHTLVGELGLGQRQLVEIAKALNKQVRLLVLDEPTASLTESETAILLDIIRDLRH 184
             +++    +G L  G +Q V IA+ L  + ++L+LDEPT  +       +  +I   + 
Sbjct: 386 TPSMEQ--AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA 443

Query: 185 HDIACIYISHKLNEVKAISDKLCVIRDGRHIATCNAAGTSEKEIIAMMVGR 235
             ++ I +S ++ EV  +SD++ V+ +G           +++ ++A  VG+
Sbjct: 444 DGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494