Pairwise Alignments

Query, 403 a.a., D-alanyl-D-alanine carboxypeptidase from Rahnella sp. WP5

Subject, 388 a.a., penicillin binding protein 6b (VIMSS) from Escherichia coli BW25113

 Score =  347 bits (890), Expect = e-100
 Identities = 175/378 (46%), Positives = 253/378 (66%), Gaps = 6/378 (1%)

Query: 11  FIYALGGGVLLLALPAAQADNAPVAPQINAKSWVLMDYNSGKILTESNPDARLDPASLSK 70
           F++ L  G     +P +     P  P+I+A SWVLMDY +G+ILT  N   + +PASL+K
Sbjct: 12  FVFNLSSGFAAENIPFS-----PQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTK 66

Query: 71  IMVSYVVGQAIKSGKIKSDDLVSVGNDAWATGNPVLRGSSLMFLKPGDRVPVSELNKGIV 130
           +M  YVV +AI S +I  DD+V+VG DAWA  NPV  GSSLMFLK GDRV V +L++G++
Sbjct: 67  LMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLI 126

Query: 131 IQSGNDASIALADFVAGSQDSFVNLMNRYAEQLKLQNTHFKTVHGLDADGQYTSATDMAL 190
           + SGNDA +ALAD++AG Q  FV +MN YAE+L L++THF+TVHGLDA GQ++SA D+A+
Sbjct: 127 VDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAV 186

Query: 191 LSQALIRDTPDEYALHKEKEFTFNHIKQINRNRLLWSSNLNVDGIKTGYTSGAGYNLVSS 250
           LS+A+I   P+ Y ++ EK  T+N I Q NRN LLW   +NVDG+KTG+TSGAG+NL++S
Sbjct: 187 LSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIAS 246

Query: 251 ASDSTGMRLIAVVMGAPSDRIRFNESESLLTWGFRFYETLTPIKAGDAFTSQRVWFGEEK 310
           A D    RLIAVVMGA S + R  E+  LL WG + + T+  +  G    ++R+W+G+++
Sbjct: 247 AVDGQ-RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKE 305

Query: 311 MVPLGVAENASLTMPKGQLKNLKASFNLTSPQLEAPLAKNQVVGTVDFSLDGKVIEQRPL 370
            + LG  +   + +PK ++ ++KA + L   +L AP++ +Q VG ++     K +   PL
Sbjct: 306 NIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPL 365

Query: 371 VALQEVKETGFIGRIWDF 388
           V L+ V E     R+ D+
Sbjct: 366 VTLESVGEGSMFSRLSDY 383