Pairwise Alignments

Query, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

Subject, 431 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  109 bits (273), Expect = 1e-28
 Identities = 104/382 (27%), Positives = 168/382 (43%), Gaps = 51/382 (13%)

Query: 9   GTCRSCQWLDKPYLQQLADKQRDLSDLLSDLPVDEWCEPVTGPESAFRNKAKMVVSGSVE 68
           G C  CQ         +A +QR  S  L+ L   E  + + G    +R +A++ ++   +
Sbjct: 85  GVCGGCQQQHV----SIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPD 140

Query: 69  RPLLGMLHRDGTP--VDLCECPLYPASFPAVFSVLKIFIARAGLTPYNVARKRGELKFLL 126
           +PL     + G+   V++ +CP+      A+   +     RA L   +  R  G ++ + 
Sbjct: 141 KPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRI-----RACLASLHGTRHLGHVELV- 194

Query: 127 LTESQKDGGMMLRFVLRSDAKLAQLRAALPWLQQQLPQLKVISANIQPVHMAILEGDTEI 186
               Q   G ++  +LR  A L+   AA     ++    + +S  + P    +     E 
Sbjct: 195 ----QAGSGTLM--ILRHTAPLS---AADKEKLERFSHSEGLSLFLAPFSEILETVSGEA 245

Query: 187 PLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWVRARGDIRSMWDLFCGVG 246
           P  D   L   F+       P+ F Q N  V +++ A A +W+  R + R + DLFCG+G
Sbjct: 246 PWYDSHGLRLAFS-------PRDFIQVNEAVNQQMVARALEWLDVRAEDRVL-DLFCGMG 297

Query: 247 GFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEF-----------QALDSTGFA 295
            F L  AT    + G+E     +   +E+A+R GL NV F           Q     GF 
Sbjct: 298 NFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGF- 356

Query: 296 TGKGEVPDLVLVNPPRRGIGKALCEYLSHMAPDRILYSSCNAQTMAQDLALLPD--YHIL 353
                  D VL++P R G    +  ++  + P RI+Y SCN  T+A+D   L +  Y + 
Sbjct: 357 -------DKVLLDPARAG-ATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVT 408

Query: 354 RVRLFDMFPHTAHYEVMALLVR 375
           R+ + DMFPHT H E M L  R
Sbjct: 409 RLAMLDMFPHTGHLESMVLFER 430