Pairwise Alignments

Query, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

Subject, 467 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  117 bits (294), Expect = 5e-31
 Identities = 104/389 (26%), Positives = 174/389 (44%), Gaps = 27/389 (6%)

Query: 9   GTCRSCQWLDKPYLQQLADKQRDLSDL---LSDLPVDEWCEPV-TGPESAFRNKAKMVVS 64
           G C  C+W    Y  Q+  K++ + D    ++ +P+ E    + +G    +RNK     S
Sbjct: 79  GVCGGCKWQHINYDLQMNYKRQQVVDQFQRIAKVPIPEVLPIIGSGDTQYYRNKLDFTFS 138

Query: 65  GS-------------VERPLLG--MLHRDGTPVDLCECPLYPASFPAVFSVLKIFIARAG 109
            +              ER  LG  +  R    VD+  C L       V + L+ F     
Sbjct: 139 NNRWLTREQIDSGEEFERNALGFHIPKRFDKIVDVDHCYLQGGLSNEVRNALREFALENS 198

Query: 110 LTPYNVARKRGELKFLLLTESQKDGGMMLRFVLRSDAKLAQLRAALPWLQQQLPQLKVIS 169
           LT +++ ++ G L+ L++  +  D  M++  V   +    Q+   + +L  + P +  + 
Sbjct: 199 LTFFDMIKQNGLLRNLIIRTTTTDETMVI--VQFGENHPEQIEQVMDFLAGRFPSITSLL 256

Query: 170 ANIQPVHMAILEGDTEIPLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWV 229
             I                     + E+   +   I P+SF+QTN   A +LY  AR++ 
Sbjct: 257 YIINLKKNETFHDQEIHTFMGRDYIIEEMEGLQFRIGPKSFYQTNSKQAYELYKVAREFA 316

Query: 230 RARGDIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEFQAL 289
             +G+   ++DL+ G G      A    ++ GIE   EAI  AK +A   GL+N +F A 
Sbjct: 317 SLQGN-EVVYDLYTGTGTIANFIAKKAKQVIGIEYVEEAIEDAKLNAKENGLENTQFYAG 375

Query: 290 DSTGFATGK----GEVPDLVLVNPPRRGIGKALCEYLSHMAPDRILYSSCNAQTMAQDLA 345
           D     T +       PD+++ +PPR G+ + +   L  +A  +I+Y SCN  T A+D+A
Sbjct: 376 DMKDMLTDEFIADHAAPDVIITDPPRAGMHEDVVNMLLKLAAPKIVYISCNPATQARDIA 435

Query: 346 LLPD-YHILRVRLFDMFPHTAHYEVMALL 373
           LL + Y +  V+  DMFP T H E + LL
Sbjct: 436 LLGEKYSVDIVQPVDMFPQTYHVENVVLL 464