Pairwise Alignments

Query, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score = 90.5 bits (223), Expect = 8e-23
 Identities = 105/387 (27%), Positives = 161/387 (41%), Gaps = 60/387 (15%)

Query: 9   GTCRSCQWLDKPYLQQLAD---KQRDLSDLLSDLPVDEWCEPVTGPESAFRNKAKMVVSG 65
           G C  CQ       QQ A    +QR  S  L+ L   +  E +      +R +A++ ++ 
Sbjct: 85  GVCGGCQ-------QQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNY 137

Query: 66  SVERPLLGMLHRDGTP---VDLCECPLYPASFPAVFSVLKIFIARAGLTPYNVARKRGEL 122
             +   L M  R       VD+ +CP+      A+   +     RA L      R  G +
Sbjct: 138 LPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKV-----RACLGSLQAMRHLGHV 192

Query: 123 KFLLLTESQKDGGMMLRFVLRSDAKLAQL-RAALPWLQQQLPQLKVISANIQPVHMAILE 181
           + +  T     G +M   +LR  A L+   R  L    ++    + +   + P    +  
Sbjct: 193 ELVQATS----GTLM---ILRHTAPLSSADREKL----ERFSHSEGLDLYLAPDSEILET 241

Query: 182 GDTEIPLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWVRARGDIRSMWDL 241
              E+P  D   L   F+       P+ F Q N  V +K+ A A + +  + + R + DL
Sbjct: 242 VSGEMPWYDSNGLRLTFS-------PRDFIQVNAGVNQKMVARALELLDVQPEDRVL-DL 293

Query: 242 FCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEF-----------QALD 290
           FCG+G F L  AT    + G+E     +   +++A   GLQNV F           Q   
Sbjct: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353

Query: 291 STGFATGKGEVPDLVLVNPPRRGIGKALCEYLSHMAPDRILYSSCNAQTMAQD--LALLP 348
             GF        D VL++P R G    + + +  + P RI+Y SCN  T+A+D    L  
Sbjct: 354 KNGF--------DKVLLDPARAG-AAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKA 404

Query: 349 DYHILRVRLFDMFPHTAHYEVMALLVR 375
            Y I R+ + DMFPHT H E M L  R
Sbjct: 405 GYTIARLAMLDMFPHTGHLESMVLFSR 431